Analysis of interatomic Contacts of Structural Units in PDB entry:
8H55

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H55 entry

There are 2 chains in PDB entry 8H55 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	ALA 436
B	VAL 5	VAL 234

There are 24 helices in PDB entry 8H55. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed 310
Helix 2	AA2	A	57	83	Right-handed alpha
Helix 3	AA3	A	92	105	Right-handed alpha
Helix 4	AA4	A	108	120	Right-handed alpha
Helix 5	AA5	A	135	151	Right-handed alpha
Helix 6	AA6	A	173	182	Right-handed alpha
Helix 7	AA7	A	195	210	Right-handed alpha
Helix 8	AA8	A	240	245	Right-handed alpha
Helix 9	AA9	A	306	311	Right-handed alpha
Helix 10	AB1	A	313	324	Right-handed alpha
Helix 11	AB2	A	345	352	Right-handed alpha
Helix 12	AB3	A	354	359	Right-handed alpha
Helix 13	AB4	B	6	12	Right-handed 310
Helix 14	AB5	B	57	84	Right-handed alpha
Helix 15	AB6	B	92	105	Right-handed alpha
Helix 16	AB7	B	108	120	Right-handed alpha
Helix 17	AB8	B	135	151	Right-handed alpha
Helix 18	AB9	B	173	183	Right-handed alpha
Helix 19	AC1	B	195	210	Right-handed alpha
Helix 20	AC2	B	240	245	Right-handed alpha
Helix 21	AC3	B	306	311	Right-handed alpha
Helix 22	AC4	B	313	324	Right-handed alpha
Helix 23	AC5	B	345	352	Right-handed alpha
Helix 24	AC6	B	354	359	Right-handed alpha

There are 10 sheets in PDB entry 8H55. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	130	131	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	171	172	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	424	431	anti-parallel
Strand 3	A	413	419	anti-parallel
Strand 4	A	294	301	anti-parallel
Strand 5	A	283	289	anti-parallel
Strand 6	A	260	278	anti-parallel
Strand 7	A	248	257	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	424	431	anti-parallel
Strand 3	A	413	419	anti-parallel
Strand 4	A	294	301	anti-parallel
Strand 5	A	283	289	anti-parallel
Strand 6	A	260	278	anti-parallel
Strand 7	A	326	335	anti-parallel
Strand 8	A	405	408	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	157	166	parallel
Strand 3	A	228	239	anti-parallel
Strand 4	A	378	388	parallel
Strand 5	A	339	344	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	130	131	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	171	172	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	425	431	anti-parallel
Strand 3	B	413	419	anti-parallel
Strand 4	B	294	301	anti-parallel
Strand 5	B	283	289	anti-parallel
Strand 6	B	260	278	anti-parallel
Strand 7	B	248	257	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	425	431	anti-parallel
Strand 3	B	413	419	anti-parallel
Strand 4	B	294	301	anti-parallel
Strand 5	B	283	289	anti-parallel
Strand 6	B	260	278	anti-parallel
Strand 7	B	326	335	anti-parallel
Strand 8	B	405	408	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	157	166	parallel
Strand 3	B	228	239	anti-parallel
Strand 4	B	378	388	parallel
Strand 5	B	339	344	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H55

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H55