Analysis of interatomic Contacts of Structural Units in PDB entry:
8H5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H5D entry

There are 2 chains in PDB entry 8H5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2HIS 409
B
 ALA 2SER 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8H5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 27Right-handed alpha
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
A
40 46Right-handed alpha
Helix 4
AA4
A
73 97Right-handed alpha
Helix 5
AA5
A
110 121Right-handed alpha
Helix 6
AA6
A
138 143Right-handed 310
Helix 7
AA7
A
155 171Right-handed alpha
Helix 8
AA8
A
176 181Right-handed 310
Helix 9
AA9
A
199 203Right-handed 310
Helix 10
AB1
A
224 228Right-handed 310
Helix 11
AB2
A
245 257Right-handed alpha
Helix 12
AB3
A
272 276Right-handed 310
Helix 13
AB4
A
290 298Right-handed alpha
Helix 14
AB5
A
306 316Right-handed alpha
Helix 15
AB6
A
328 339Right-handed alpha
Helix 16
AB7
A
351 363Right-handed alpha
Helix 17
AB8
A
365 381Right-handed alpha
Helix 18
AB9
A
383 404Right-handed alpha
Helix 19
AC1
B
11 28Right-handed alpha
Helix 20
AC2
B
37 39Right-handed 310
Helix 21
AC3
B
40 46Right-handed alpha
Helix 22
AC4
B
73 97Right-handed alpha
Helix 23
AC5
B
110 120Right-handed alpha
Helix 24
AC6
B
149 153Right-handed 310
Helix 25
AC7
B
155 170Right-handed alpha
Helix 26
AC8
B
176 181Right-handed 310
Helix 27
AC9
B
199 203Right-handed 310
Helix 28
AD1
B
224 228Right-handed 310
Helix 29
AD2
B
245 257Right-handed alpha
Helix 30
AD3
B
272 276Right-handed 310
Helix 31
AD4
B
290 297Right-handed alpha
Helix 32
AD5
B
306 316Right-handed alpha
Helix 33
AD6
B
328 339Right-handed alpha
Helix 34
AD7
B
346 350Right-handed 310
Helix 35
AD8
B
351 363Right-handed alpha
Helix 36
AD9
B
365 382Right-handed alpha
Helix 37
AE1
B
384 400Right-handed alpha
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There are 4 sheets in PDB entry 8H5D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
31 35parallel
Strand 3
A
3 7parallel
Strand 4
A
103 107parallel
Strand 5
A
124 128parallel
Strand 6
A
187 190parallel
Strand 7
A
207 209parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
262 266parallel
Strand 3
A
233 237parallel
Strand 4
A
300 303parallel
Strand 5
A
320 322parallel
Strand 6
A
342 344parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
31 36parallel
Strand 3
B
3 7parallel
Strand 4
B
103 107parallel
Strand 5
B
124 128parallel
Strand 6
B
187 190parallel
Strand 7
B
207 209parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 286first strand
Strand 2
B
262 266parallel
Strand 3
B
233 237parallel
Strand 4
B
298 303parallel
Strand 5
B
320 322parallel
Strand 6
B
342 344parallel
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