Analysis of interatomic Contacts of Structural Units in PDB entry:
8H5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H5U entry

There are 4 chains in PDB entry 8H5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 334	LYS 528
B	GLU 1	SER 113
C	ASN 334	ASN 532
D	GLU 1	SER 113

There are 19 helices in PDB entry 8H5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	337	343	Right-handed alpha
Helix 2	AA2	A	365	370	Right-handed alpha
Helix 3	AA3	A	383	388	Right-handed alpha
Helix 4	AA4	A	405	410	Right-handed 310
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	438	443	Right-handed alpha
Helix 7	AA7	A	502	505	Right-handed 310
Helix 8	AA8	B	30	34	Right-handed 310
Helix 9	AA9	B	88	92	Right-handed 310
Helix 10	AB1	C	337	343	Right-handed alpha
Helix 11	AB2	C	365	370	Right-handed alpha
Helix 12	AB3	C	386	389	Right-handed 310
Helix 13	AB4	C	405	410	Right-handed 310
Helix 14	AB5	C	416	422	Right-handed alpha
Helix 15	AB6	C	438	443	Right-handed alpha
Helix 16	AB7	C	502	505	Right-handed 310
Helix 17	AB8	C	527	530	Right-handed 310
Helix 18	AB9	D	30	34	Right-handed 310
Helix 19	AC1	D	88	92	Right-handed 310

There are 12 sheets in PDB entry 8H5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel
Strand 6	B	46	53	anti-parallel
Strand 7	B	36	42	anti-parallel
Strand 8	B	93	99	anti-parallel
Strand 9	B	59	60	first strand

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	93	99	anti-parallel
Strand 4	B	36	42	anti-parallel
Strand 5	B	46	53	anti-parallel
Strand 6	B	102	103	first strand

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	69	74	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	394	403	anti-parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	380	anti-parallel
Strand 6	D	46	53	anti-parallel
Strand 7	D	36	42	anti-parallel
Strand 8	D	93	99	anti-parallel
Strand 9	D	59	60	first strand

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	107	111	parallel
Strand 3	D	93	99	anti-parallel
Strand 4	D	36	42	anti-parallel
Strand 5	D	46	53	anti-parallel
Strand 6	D	102	103	first strand

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel
Strand 3	C	391	392	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	79	84	anti-parallel
Strand 4	D	69	74	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H5U