Analysis of interatomic Contacts of Structural Units in PDB entry:
8H5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H5Y entry

There are 2 chains in PDB entry 8H5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	PHE 578
A	MET 1	GLU 575

There are 36 helices in PDB entry 8H5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	21	Right-handed alpha
Helix 2	AA2	B	36	48	Right-handed alpha
Helix 3	AA3	B	58	71	Right-handed alpha
Helix 4	AA4	B	97	103	Right-handed alpha
Helix 5	AA5	B	104	107	Right-handed 310
Helix 6	AA6	B	120	124	Right-handed 310
Helix 7	AA7	B	128	141	Right-handed alpha
Helix 8	AA8	B	186	193	Right-handed alpha
Helix 9	AA9	B	223	231	Right-handed alpha
Helix 10	AB1	B	236	250	Right-handed alpha
Helix 11	AB2	B	261	270	Right-handed alpha
Helix 12	AB3	B	286	296	Right-handed alpha
Helix 13	AB4	B	330	340	Right-handed alpha
Helix 14	AB5	B	457	467	Right-handed alpha
Helix 15	AB6	B	512	523	Right-handed alpha
Helix 16	AB7	B	523	528	Right-handed alpha
Helix 17	AB8	B	539	546	Right-handed alpha
Helix 18	AB9	B	547	550	Right-handed 310
Helix 19	AC1	A	6	21	Right-handed alpha
Helix 20	AC2	A	36	48	Right-handed alpha
Helix 21	AC3	A	58	71	Right-handed alpha
Helix 22	AC4	A	97	103	Right-handed alpha
Helix 23	AC5	A	104	107	Right-handed 310
Helix 24	AC6	A	118	122	Right-handed 310
Helix 25	AC7	A	127	141	Right-handed alpha
Helix 26	AC8	A	186	193	Right-handed alpha
Helix 27	AC9	A	223	233	Right-handed alpha
Helix 28	AD1	A	237	250	Right-handed alpha
Helix 29	AD2	A	261	270	Right-handed alpha
Helix 30	AD3	A	286	296	Right-handed alpha
Helix 31	AD4	A	330	340	Right-handed alpha
Helix 32	AD5	A	457	467	Right-handed alpha
Helix 33	AD6	A	512	523	Right-handed alpha
Helix 34	AD7	A	523	528	Right-handed alpha
Helix 35	AD8	A	539	546	Right-handed alpha
Helix 36	AD9	A	547	550	Right-handed 310

There are 13 sheets in PDB entry 8H5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	79	first strand
Strand 2	B	92	96	parallel
Strand 3	B	51	56	parallel
Strand 4	B	111	116	parallel
Strand 5	B	145	150	parallel
Strand 6	B	27	30	parallel
Strand 7	B	178	184	parallel
Strand 8	B	162	165	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	159	160	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	351	355	parallel
Strand 3	B	319	324	parallel
Strand 4	B	254	258	parallel
Strand 5	B	303	306	parallel
Strand 6	B	277	280	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	383	first strand
Strand 2	B	390	397	anti-parallel
Strand 3	B	403	406	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	422	424	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	509	first strand
Strand 2	B	489	498	anti-parallel
Strand 3	B	472	486	anti-parallel
Strand 4	B	555	559	anti-parallel
Strand 5	B	566	571	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	79	first strand
Strand 2	A	92	96	parallel
Strand 3	A	51	56	parallel
Strand 4	A	111	116	parallel
Strand 5	A	145	150	parallel
Strand 6	A	27	30	parallel
Strand 7	A	178	184	parallel
Strand 8	A	162	165	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	159	160	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	351	355	parallel
Strand 3	A	321	324	parallel
Strand 4	A	255	258	parallel
Strand 5	A	303	306	parallel
Strand 6	A	277	280	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	383	first strand
Strand 2	A	390	397	anti-parallel
Strand 3	A	403	406	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	416	first strand
Strand 2	A	422	424	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	475	first strand
Strand 2	A	555	559	anti-parallel
Strand 3	A	566	571	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	486	first strand
Strand 2	A	489	497	anti-parallel
Strand 3	A	503	509	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H5Y