Analysis of interatomic Contacts of Structural Units in PDB entry:
8H62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H62 entry

There are 2 chains in PDB entry 8H62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 35ALA 496
B
 ASP 1ASP 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8H62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 48Right-handed alpha
Helix 2
AA2
A
50 61Right-handed alpha
Helix 3
AA3
A
71 76Right-handed alpha
Helix 4
AA4
A
93 97Right-handed 310
Helix 5
AA5
A
113 117Right-handed 310
Helix 6
AA6
A
135 139Right-handed 310
Helix 7
AA7
A
157 161Right-handed 310
Helix 8
AA8
A
179 183Right-handed 310
Helix 9
AA9
A
200 204Right-handed 310
Helix 10
AB1
A
222 228Right-handed 310
Helix 11
AB2
A
244 250Right-handed 310
Helix 12
AB3
A
266 272Right-handed 310
Helix 13
AB4
A
288 292Right-handed 310
Helix 14
AB5
A
310 314Right-handed 310
Helix 15
AB6
A
332 338Right-handed 310
Helix 16
AB7
A
354 360Right-handed 310
Helix 17
AB8
A
376 382Right-handed 310
Helix 18
AB9
A
398 402Right-handed 310
Helix 19
AC1
A
449 451Right-handed 310
Helix 20
AC2
B
28 31Right-handed 310
Helix 21
AC3
B
196 199Right-handed 310
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There are 11 sheets in PDB entry 8H62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
69 70anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
102 104parallel
Strand 3
A
124 126parallel
Strand 4
A
146 148parallel
Strand 5
A
168 176parallel
Strand 6
A
190 195parallel
Strand 7
A
211 213parallel
Strand 8
A
233 235parallel
Strand 9
A
255 257parallel
Strand 10
A
277 279parallel
Strand 11
A
299 301parallel
Strand 12
A
321 323parallel
Strand 13
A
343 345parallel
Strand 14
A
365 367parallel
Strand 15
A
387 389parallel
Strand 16
A
409 411parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 418first strand
Strand 2
A
482 495parallel
Strand 3
A
422 423parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 418first strand
Strand 2
A
482 495parallel
Strand 3
A
468 479anti-parallel
Strand 4
A
446 447anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 431first strand
Strand 2
A
457 461anti-parallel
Strand 3
A
452 454anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
25 26anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
92 99parallel
Strand 3
B
73 82anti-parallel
Strand 4
B
34 40anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 23first strand
Strand 2
B
59 62anti-parallel
Strand 3
B
51 53anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
132 133anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 118first strand
Strand 2
B
202 212parallel
Strand 3
B
186 194anti-parallel
Strand 4
B
147 154anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
171 174anti-parallel
Strand 3
B
163 165anti-parallel
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