Analysis of interatomic Contacts of Structural Units in PDB entry:
8H69

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H69 entry

There are 5 chains in PDB entry 8H69 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
3	U 1	U 18
5	A 1	U 19
A	MET 1	LYS 716
B	MET 1	ARG 754
C	MET 1	THR 683

There are 92 helices in PDB entry 8H69. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	8	Right-handed alpha
Helix 2	AA2	A	10	22	Right-handed alpha
Helix 3	AA3	A	33	48	Right-handed alpha
Helix 4	AA4	A	83	98	Right-handed alpha
Helix 5	AA5	A	126	134	Right-handed alpha
Helix 6	AA6	A	156	160	Right-handed 310
Helix 7	AA7	A	164	186	Right-handed alpha
Helix 8	AA8	A	225	234	Right-handed alpha
Helix 9	AA9	A	240	249	Right-handed alpha
Helix 10	AB1	A	302	313	Right-handed alpha
Helix 11	AB2	A	330	345	Right-handed alpha
Helix 12	AB3	A	346	348	Right-handed 310
Helix 13	AB4	A	364	369	Right-handed alpha
Helix 14	AB5	A	405	416	Right-handed alpha
Helix 15	AB6	A	433	445	Right-handed alpha
Helix 16	AB7	A	446	449	Right-handed 310
Helix 17	AB8	A	454	476	Right-handed alpha
Helix 18	AB9	A	529	533	Right-handed 310
Helix 19	AC1	A	580	582	Right-handed 310
Helix 20	AC2	A	583	598	Right-handed alpha
Helix 21	AC3	A	599	604	Right-handed alpha
Helix 22	AC4	A	607	612	Right-handed alpha
Helix 23	AC5	A	632	650	Right-handed alpha
Helix 24	AC6	A	652	660	Right-handed alpha
Helix 25	AC7	A	662	674	Right-handed alpha
Helix 26	AC8	A	682	691	Right-handed alpha
Helix 27	AC9	A	699	712	Right-handed alpha
Helix 28	AD1	B	5	11	Right-handed 310
Helix 29	AD2	B	17	22	Right-handed 310
Helix 30	AD3	B	35	50	Right-handed alpha
Helix 31	AD4	B	84	94	Right-handed alpha
Helix 32	AD5	B	94	99	Right-handed alpha
Helix 33	AD6	B	101	114	Right-handed alpha
Helix 34	AD7	B	138	153	Right-handed alpha
Helix 35	AD8	B	165	173	Right-handed alpha
Helix 36	AD9	B	216	222	Right-handed alpha
Helix 37	AE1	B	245	266	Right-handed alpha
Helix 38	AE2	B	274	285	Right-handed alpha
Helix 39	AE3	B	287	291	Right-handed 310
Helix 40	AE4	B	314	325	Right-handed alpha
Helix 41	AE5	B	330	337	Right-handed alpha
Helix 42	AE6	B	338	343	Right-handed alpha
Helix 43	AE7	B	371	375	Right-handed 310
Helix 44	AE8	B	377	381	Right-handed 310
Helix 45	AE9	B	382	391	Right-handed alpha
Helix 46	AF1	B	392	394	Right-handed 310
Helix 47	AF2	B	415	427	Right-handed alpha
Helix 48	AF3	B	428	433	Right-handed alpha
Helix 49	AF4	B	455	471	Right-handed alpha
Helix 50	AF5	B	472	474	Right-handed 310
Helix 51	AF6	B	525	534	Right-handed alpha
Helix 52	AF7	B	548	559	Right-handed alpha
Helix 53	AF8	B	573	583	Right-handed alpha
Helix 54	AF9	B	585	589	Right-handed 310
Helix 55	AG1	B	590	594	Right-handed 310
Helix 56	AG2	B	607	612	Right-handed alpha
Helix 57	AG3	B	617	625	Right-handed alpha
Helix 58	AG4	B	672	676	Right-handed 310
Helix 59	AG5	B	679	683	Right-handed 310
Helix 60	AG6	B	692	697	Right-handed alpha
Helix 61	AG7	B	701	705	Right-handed 310
Helix 62	AG8	B	713	731	Right-handed alpha
Helix 63	AG9	B	738	752	Right-handed alpha
Helix 64	AH1	C	2	10	Right-handed alpha
Helix 65	AH2	C	24	32	Right-handed alpha
Helix 66	AH3	C	42	51	Right-handed alpha
Helix 67	AH4	C	62	67	Right-handed alpha
Helix 68	AH5	C	92	103	Right-handed alpha
Helix 69	AH6	C	110	115	Right-handed alpha
Helix 70	AH7	C	115	127	Right-handed alpha
Helix 71	AH8	C	155	168	Right-handed alpha
Helix 72	AH9	C	169	172	Right-handed 310
Helix 73	AI1	C	181	197	Right-handed alpha
Helix 74	AI2	C	203	208	Right-handed alpha
Helix 75	AI3	C	254	273	Right-handed alpha
Helix 76	AI4	C	275	283	Right-handed alpha
Helix 77	AI5	C	284	286	Right-handed 310
Helix 78	AI6	C	294	298	Right-handed alpha
Helix 79	AI7	C	305	315	Right-handed alpha
Helix 80	AI8	C	390	405	Right-handed alpha
Helix 81	AI9	C	407	412	Right-handed alpha
Helix 82	AJ1	C	429	441	Right-handed alpha
Helix 83	AJ2	C	442	449	Right-handed alpha
Helix 84	AJ3	C	536	541	Right-handed alpha
Helix 85	AJ4	C	541	556	Right-handed alpha
Helix 86	AJ5	C	556	566	Right-handed alpha
Helix 87	AJ6	C	567	573	Right-handed alpha
Helix 88	AJ7	C	579	583	Right-handed 310
Helix 89	AJ8	C	590	607	Right-handed alpha
Helix 90	AJ9	C	612	619	Right-handed alpha
Helix 91	AK1	C	620	624	Right-handed 310
Helix 92	AK2	C	677	682	Right-handed alpha

There are 22 sheets in PDB entry 8H69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	109	111	anti-parallel
Strand 3	A	117	123	anti-parallel
Strand 4	A	143	149	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	497	506	anti-parallel
Strand 3	A	480	487	anti-parallel
Strand 4	A	358	360	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	497	506	anti-parallel
Strand 3	A	518	524	anti-parallel
Strand 4	A	556	570	anti-parallel
Strand 5	A	541	551	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	B	364	369	parallel
Strand 3	B	354	359	anti-parallel
Strand 4	A	390	392	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	490	491	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	631	first strand
Strand 2	A	619	624	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	66	67	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	208	210	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	192	first strand
Strand 2	B	199	205	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	223	226	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	442	first strand
Strand 2	B	447	453	anti-parallel
Strand 3	B	298	302	anti-parallel
Strand 4	B	484	486	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	496	498	anti-parallel
Strand 3	B	501	503	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	644	first strand
Strand 2	B	654	655	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	C	57	59	anti-parallel
Strand 3	C	89	91	anti-parallel
Strand 4	C	78	82	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	134	first strand
Strand 2	C	241	245	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	147	first strand
Strand 2	C	214	220	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	293	first strand
Strand 2	C	288	289	anti-parallel
Strand 3	C	529	530	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	335	first strand
Strand 2	C	361	366	anti-parallel
Strand 3	C	370	377	anti-parallel
Strand 4	C	380	388	anti-parallel
Strand 5	C	478	481	parallel
Strand 6	C	460	463	anti-parallel
Strand 7	C	469	470	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	345	first strand
Strand 2	C	351	355	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	453	first strand
Strand 2	C	473	475	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	636	639	first strand
Strand 2	C	644	647	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	656	659	first strand
Strand 2	C	664	667	anti-parallel
Strand 3	C	670	672	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H69

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H69