Analysis of interatomic Contacts of Structural Units in PDB entry:
8H6C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H6C entry

There are 8 chains in PDB entry 8H6C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ILE 498	THR 662
D	GLY 497	THR 662
E	GLY 497	TYR 661
F	GLY 497	THR 662
B	GLY 497	THR 662
A	GLY 497	THR 662
G	GLY 497	THR 662
H	GLY 497	THR 662

There are 50 helices in PDB entry 8H6C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	513	531	Right-handed alpha
Helix 2	AA2	C	535	544	Right-handed alpha
Helix 3	AA3	C	583	586	Right-handed 310
Helix 4	AA4	C	589	604	Right-handed alpha
Helix 5	AA5	C	615	625	Right-handed alpha
Helix 6	AA6	C	634	639	Right-handed alpha
Helix 7	AA7	D	513	531	Right-handed alpha
Helix 8	AA8	D	535	544	Right-handed alpha
Helix 9	AA9	D	583	586	Right-handed 310
Helix 10	AB1	D	589	605	Right-handed alpha
Helix 11	AB2	D	618	625	Right-handed alpha
Helix 12	AB3	D	634	639	Right-handed alpha
Helix 13	AB4	E	513	531	Right-handed alpha
Helix 14	AB5	E	535	544	Right-handed alpha
Helix 15	AB6	E	569	572	Right-handed 310
Helix 16	AB7	E	583	586	Right-handed 310
Helix 17	AB8	E	589	605	Right-handed alpha
Helix 18	AB9	E	618	625	Right-handed alpha
Helix 19	AC1	E	634	639	Right-handed alpha
Helix 20	AC2	F	513	531	Right-handed alpha
Helix 21	AC3	F	535	544	Right-handed alpha
Helix 22	AC4	F	583	586	Right-handed 310
Helix 23	AC5	F	589	604	Right-handed alpha
Helix 24	AC6	F	618	625	Right-handed alpha
Helix 25	AC7	F	634	639	Right-handed alpha
Helix 26	AC8	B	513	531	Right-handed alpha
Helix 27	AC9	B	535	544	Right-handed alpha
Helix 28	AD1	B	583	586	Right-handed 310
Helix 29	AD2	B	589	605	Right-handed alpha
Helix 30	AD3	B	618	625	Right-handed alpha
Helix 31	AD4	B	634	639	Right-handed alpha
Helix 32	AD5	A	513	531	Right-handed alpha
Helix 33	AD6	A	535	544	Right-handed alpha
Helix 34	AD7	A	569	572	Right-handed 310
Helix 35	AD8	A	583	586	Right-handed 310
Helix 36	AD9	A	589	604	Right-handed alpha
Helix 37	AE1	A	618	625	Right-handed alpha
Helix 38	AE2	A	634	639	Right-handed alpha
Helix 39	AE3	G	513	531	Right-handed alpha
Helix 40	AE4	G	535	544	Right-handed alpha
Helix 41	AE5	G	583	586	Right-handed 310
Helix 42	AE6	G	589	605	Right-handed alpha
Helix 43	AE7	G	618	625	Right-handed alpha
Helix 44	AE8	G	634	639	Right-handed alpha
Helix 45	AE9	H	514	531	Right-handed alpha
Helix 46	AF1	H	535	544	Right-handed alpha
Helix 47	AF2	H	583	586	Right-handed 310
Helix 48	AF3	H	589	605	Right-handed alpha
Helix 49	AF4	H	618	625	Right-handed alpha
Helix 50	AF5	H	634	639	Right-handed alpha

There are 8 sheets in PDB entry 8H6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	499	504	first strand
Strand 2	C	548	555	anti-parallel
Strand 3	C	558	568	anti-parallel
Strand 4	C	573	581	anti-parallel
Strand 5	C	609	614	parallel
Strand 6	C	649	654	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	499	504	first strand
Strand 2	D	548	555	anti-parallel
Strand 3	D	558	568	anti-parallel
Strand 4	D	573	581	anti-parallel
Strand 5	D	609	614	parallel
Strand 6	D	649	654	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	499	504	first strand
Strand 2	E	549	555	anti-parallel
Strand 3	E	558	568	anti-parallel
Strand 4	E	573	581	anti-parallel
Strand 5	E	609	614	parallel
Strand 6	E	649	654	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	499	504	first strand
Strand 2	F	549	555	anti-parallel
Strand 3	F	558	568	anti-parallel
Strand 4	F	573	581	anti-parallel
Strand 5	F	609	614	parallel
Strand 6	F	649	654	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	504	first strand
Strand 2	B	549	555	anti-parallel
Strand 3	B	558	568	anti-parallel
Strand 4	B	573	581	anti-parallel
Strand 5	B	609	614	parallel
Strand 6	B	649	654	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	504	first strand
Strand 2	A	549	555	anti-parallel
Strand 3	A	558	568	anti-parallel
Strand 4	A	573	581	anti-parallel
Strand 5	A	609	614	parallel
Strand 6	A	649	654	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	499	504	first strand
Strand 2	G	549	555	anti-parallel
Strand 3	G	558	567	anti-parallel
Strand 4	G	573	581	anti-parallel
Strand 5	G	609	614	parallel
Strand 6	G	649	654	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	499	504	first strand
Strand 2	H	549	555	anti-parallel
Strand 3	H	558	567	anti-parallel
Strand 4	H	574	581	anti-parallel
Strand 5	H	609	614	parallel
Strand 6	H	649	654	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H6C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H6C