Analysis of interatomic Contacts of Structural Units in PDB entry:
8H6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H6Q entry

There are 4 chains in PDB entry 8H6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 19PRO 352
B
 PRO 20LEU 351
C
 PRO 20LEU 351
D
 PHE 21MET 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8H6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 33Right-handed 310
Helix 2
AA2
A
41 57Right-handed alpha
Helix 3
AA3
A
60 71Right-handed alpha
Helix 4
AA4
A
71 80Right-handed alpha
Helix 5
AA5
A
84 107Right-handed alpha
Helix 6
AA6
A
113 128Right-handed alpha
Helix 7
AA7
A
140 156Right-handed alpha
Helix 8
AA8
A
158 186Right-handed alpha
Helix 9
AA9
A
192 204Right-handed alpha
Helix 10
AB1
A
205 217Right-handed alpha
Helix 11
AB2
A
222 227Right-handed alpha
Helix 12
AB3
A
228 250Right-handed alpha
Helix 13
AB4
A
250 258Right-handed alpha
Helix 14
AB5
A
262 272Right-handed alpha
Helix 15
AB6
A
274 300Right-handed alpha
Helix 16
AB7
A
304 332Right-handed alpha
Helix 17
AB8
A
337 339Right-handed 310
Helix 18
AB9
A
340 347Right-handed alpha
Helix 19
AC1
B
29 33Right-handed 310
Helix 20
AC2
B
41 58Right-handed alpha
Helix 21
AC3
B
60 71Right-handed alpha
Helix 22
AC4
B
71 80Right-handed alpha
Helix 23
AC5
B
84 107Right-handed alpha
Helix 24
AC6
B
113 128Right-handed alpha
Helix 25
AC7
B
140 156Right-handed alpha
Helix 26
AC8
B
158 185Right-handed alpha
Helix 27
AC9
B
193 204Right-handed alpha
Helix 28
AD1
B
205 218Right-handed alpha
Helix 29
AD2
B
222 227Right-handed alpha
Helix 30
AD3
B
228 250Right-handed alpha
Helix 31
AD4
B
250 258Right-handed alpha
Helix 32
AD5
B
262 272Right-handed alpha
Helix 33
AD6
B
274 299Right-handed alpha
Helix 34
AD7
B
304 332Right-handed alpha
Helix 35
AD8
B
340 347Right-handed alpha
Helix 36
AD9
C
29 33Right-handed 310
Helix 37
AE1
C
41 58Right-handed alpha
Helix 38
AE2
C
60 71Right-handed alpha
Helix 39
AE3
C
71 80Right-handed alpha
Helix 40
AE4
C
84 107Right-handed alpha
Helix 41
AE5
C
113 128Right-handed alpha
Helix 42
AE6
C
140 156Right-handed alpha
Helix 43
AE7
C
158 185Right-handed alpha
Helix 44
AE8
C
193 204Right-handed alpha
Helix 45
AE9
C
205 218Right-handed alpha
Helix 46
AF1
C
222 227Right-handed alpha
Helix 47
AF2
C
228 250Right-handed alpha
Helix 48
AF3
C
250 257Right-handed alpha
Helix 49
AF4
C
262 272Right-handed alpha
Helix 50
AF5
C
274 299Right-handed alpha
Helix 51
AF6
C
304 332Right-handed alpha
Helix 52
AF7
C
340 347Right-handed alpha
Helix 53
AF8
D
29 33Right-handed 310
Helix 54
AF9
D
41 57Right-handed alpha
Helix 55
AG1
D
60 71Right-handed alpha
Helix 56
AG2
D
71 80Right-handed alpha
Helix 57
AG3
D
84 107Right-handed alpha
Helix 58
AG4
D
113 128Right-handed alpha
Helix 59
AG5
D
140 157Right-handed alpha
Helix 60
AG6
D
158 185Right-handed alpha
Helix 61
AG7
D
193 204Right-handed alpha
Helix 62
AG8
D
205 218Right-handed alpha
Helix 63
AG9
D
222 227Right-handed alpha
Helix 64
AH1
D
228 250Right-handed alpha
Helix 65
AH2
D
262 272Right-handed alpha
Helix 66
AH3
D
274 300Right-handed alpha
Helix 67
AH4
D
304 332Right-handed alpha
Helix 68
AH5
D
341 347Right-handed alpha
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There are 3 sheets in PDB entry 8H6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
348 350anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 23first strand
Strand 2
B
348 350anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 23first strand
Strand 2
C
348 350anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il