Analysis of interatomic Contacts of Structural Units in PDB entry:
8H77

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H77 entry

There are 6 chains in PDB entry 8H77 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 11	ILE 690
B	GLU 11	ILE 690
C	MET 1	SER 113
D	MET 1	ASP 111
E	PRO 268	LEU 407
F	ALA 2	HIS 330

There are 64 helices in PDB entry 8H77. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	31	Right-handed alpha
Helix 2	AA2	A	37	61	Right-handed alpha
Helix 3	AA3	A	62	66	Right-handed 310
Helix 4	AA4	A	94	103	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	132	138	Right-handed 310
Helix 7	AA7	A	194	206	Right-handed alpha
Helix 8	AA8	A	299	310	Right-handed alpha
Helix 9	AA9	A	398	420	Right-handed alpha
Helix 10	AB1	A	422	444	Right-handed alpha
Helix 11	AB2	A	447	454	Right-handed alpha
Helix 12	AB3	A	469	475	Right-handed alpha
Helix 13	AB4	A	490	496	Right-handed alpha
Helix 14	AB5	A	497	499	Right-handed 310
Helix 15	AB6	A	500	506	Right-handed alpha
Helix 16	AB7	A	517	522	Right-handed alpha
Helix 17	AB8	A	548	571	Right-handed alpha
Helix 18	AB9	A	599	607	Right-handed alpha
Helix 19	AC1	A	616	621	Right-handed alpha
Helix 20	AC2	A	632	645	Right-handed alpha
Helix 21	AC3	A	648	666	Right-handed alpha
Helix 22	AC4	A	672	688	Right-handed alpha
Helix 23	AC5	B	20	32	Right-handed alpha
Helix 24	AC6	B	37	60	Right-handed alpha
Helix 25	AC7	B	61	67	Right-handed 310
Helix 26	AC8	B	94	102	Right-handed alpha
Helix 27	AC9	B	108	116	Right-handed alpha
Helix 28	AD1	B	132	138	Right-handed 310
Helix 29	AD2	B	194	206	Right-handed alpha
Helix 30	AD3	B	297	310	Right-handed alpha
Helix 31	AD4	B	371	375	Right-handed 310
Helix 32	AD5	B	398	422	Right-handed alpha
Helix 33	AD6	B	426	444	Right-handed alpha
Helix 34	AD7	B	447	452	Right-handed alpha
Helix 35	AD8	B	469	475	Right-handed alpha
Helix 36	AD9	B	490	495	Right-handed alpha
Helix 37	AE1	B	500	506	Right-handed alpha
Helix 38	AE2	B	515	526	Right-handed alpha
Helix 39	AE3	B	547	559	Right-handed alpha
Helix 40	AE4	B	560	572	Right-handed alpha
Helix 41	AE5	B	599	607	Right-handed alpha
Helix 42	AE6	B	613	621	Right-handed 310
Helix 43	AE7	B	632	645	Right-handed alpha
Helix 44	AE8	B	648	666	Right-handed alpha
Helix 45	AE9	B	672	689	Right-handed alpha
Helix 46	AF1	E	295	302	Right-handed alpha
Helix 47	AF2	E	305	312	Right-handed alpha
Helix 48	AF3	E	320	325	Right-handed alpha
Helix 49	AF4	E	327	337	Right-handed alpha
Helix 50	AF5	E	381	391	Right-handed alpha
Helix 51	AF6	E	392	395	Right-handed 310
Helix 52	AF7	F	3	10	Right-handed alpha
Helix 53	AF8	F	52	56	Right-handed 310
Helix 54	AF9	F	70	80	Right-handed alpha
Helix 55	AG1	F	97	108	Right-handed alpha
Helix 56	AG2	F	135	144	Right-handed alpha
Helix 57	AG3	F	172	193	Right-handed alpha
Helix 58	AG4	F	195	214	Right-handed alpha
Helix 59	AG5	F	220	245	Right-handed alpha
Helix 60	AG6	F	246	258	Right-handed alpha
Helix 61	AG7	F	265	278	Right-handed alpha
Helix 62	AG8	F	280	295	Right-handed alpha
Helix 63	AG9	F	298	320	Right-handed alpha
Helix 64	AH1	F	321	329	Right-handed 310

There are 17 sheets in PDB entry 8H77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	B	164	169	anti-parallel
Strand 3	B	155	159	anti-parallel
Strand 4	B	140	148	anti-parallel
Strand 5	B	178	185	anti-parallel
Strand 6	B	83	88	anti-parallel
Strand 7	B	73	76	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	281	first strand
Strand 2	A	213	217	anti-parallel
Strand 3	A	73	78	parallel
Strand 4	A	83	88	anti-parallel
Strand 5	A	178	185	anti-parallel
Strand 6	A	140	149	anti-parallel
Strand 7	A	152	159	anti-parallel
Strand 8	A	164	169	anti-parallel
Strand 9	B	14	16	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	B	18	19	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	272	275	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	322	first strand
Strand 2	A	329	336	anti-parallel
Strand 3	A	378	383	anti-parallel
Strand 4	A	353	357	parallel
Strand 5	A	360	363	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	510	513	anti-parallel
Strand 3	A	482	487	parallel
Strand 4	A	532	535	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	625	626	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	323	first strand
Strand 2	B	329	336	anti-parallel
Strand 3	B	378	383	anti-parallel
Strand 4	B	353	357	parallel
Strand 5	B	361	363	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	513	first strand
Strand 2	B	483	487	parallel
Strand 3	B	533	535	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	580	first strand
Strand 2	B	624	628	parallel
Strand 3	B	589	593	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	73	78	anti-parallel
Strand 3	C	14	19	anti-parallel
Strand 4	C	6	10	anti-parallel
Strand 5	C	99	101	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	31	first strand
Strand 2	C	35	42	anti-parallel
Strand 3	C	47	54	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	68	first strand
Strand 2	D	73	78	anti-parallel
Strand 3	D	14	19	anti-parallel
Strand 4	D	6	10	anti-parallel
Strand 5	D	99	101	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	31	first strand
Strand 2	D	35	42	anti-parallel
Strand 3	D	47	54	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	294	first strand
Strand 2	E	281	285	anti-parallel
Strand 3	E	370	380	anti-parallel
Strand 4	E	354	365	anti-parallel
Strand 5	E	343	348	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	36	first strand
Strand 2	F	154	157	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	149	150	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H77

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H77