Analysis of interatomic Contacts of Structural Units in PDB entry:
8H7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H7J entry

There is 1 chain in PDB entry 8H7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ARG 1030
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 8H7J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
507 518Right-handed alpha
Helix 2
AA2
A
552 556Right-handed 310
Helix 3
AA3
A
567 571Right-handed 310
Helix 4
AA4
A
608 611Right-handed 310
Helix 5
AA5
A
612 623Right-handed alpha
Helix 6
AA6
A
657 661Right-handed 310
Helix 7
AA7
A
748 759Right-handed alpha
Helix 8
AA8
A
793 797Right-handed 310
Helix 9
AA9
A
808 812Right-handed 310
Helix 10
AB1
A
855 866Right-handed alpha
Helix 11
AB2
A
900 904Right-handed 310
Helix 12
AB3
A
958 970Right-handed alpha
Helix 13
AB4
A
1003 1007Right-handed 310
Helix 14
AB5
A
1018 1022Right-handed 310
Back to top of page

There are 13 sheets in PDB entry 8H7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 481first strand
Strand 2
A
487 494anti-parallel
Strand 3
A
573 576anti-parallel
Strand 4
A
523 527anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 481first strand
Strand 2
A
487 494anti-parallel
Strand 3
A
497 501anti-parallel
Strand 4
A
538 540parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 544first strand
Strand 2
A
558 560anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 586first strand
Strand 2
A
592 599anti-parallel
Strand 3
A
678 681anti-parallel
Strand 4
A
628 630anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 586first strand
Strand 2
A
592 599anti-parallel
Strand 3
A
602 606anti-parallel
Strand 4
A
644 645parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
648 650first strand
Strand 2
A
662 664anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 707first strand
Strand 2
A
710 713anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
718 721first strand
Strand 2
A
728 735anti-parallel
Strand 3
A
814 817anti-parallel
Strand 4
A
764 768anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
718 721first strand
Strand 2
A
728 735anti-parallel
Strand 3
A
738 742anti-parallel
Strand 4
A
780 782parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 826first strand
Strand 2
A
835 842anti-parallel
Strand 3
A
921 924anti-parallel
Strand 4
A
872 874anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 826first strand
Strand 2
A
835 842anti-parallel
Strand 3
A
845 849anti-parallel
Strand 4
A
885 889parallel
Strand 5
A
912 914anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
928 932first strand
Strand 2
A
938 945anti-parallel
Strand 3
A
1024 1027anti-parallel
Strand 4
A
974 978anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
928 932first strand
Strand 2
A
938 945anti-parallel
Strand 3
A
948 952anti-parallel
Strand 4
A
990 992parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il