Analysis of interatomic Contacts of Structural Units in PDB entry:
8H7Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H7Q entry

There are 15 chains in PDB entry 8H7Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	U 9	G 44
L	A 20	A 54
M	C 31	A 41
B	ASN 3	VAL 301
C	ASN 3	VAL 301
E	ASN 3	VAL 301
F	ASN 3	VAL 301
G	ASN 3	VAL 301
H	ASN 3	VAL 301
I	ASN 3	VAL 301
J	THR 8	LYS 118
K	GLU 10	PRO 116
N	GLU 10	TYR 115
O	TYR 11	GLN 114
A	VAL 11	GLY 237

There are 80 helices in PDB entry 8H7Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	45	60	Right-handed alpha
Helix 2	AA2	B	104	110	Right-handed alpha
Helix 3	AA3	B	181	194	Right-handed alpha
Helix 4	AA4	B	237	246	Right-handed alpha
Helix 5	AA5	B	262	267	Right-handed 310
Helix 6	AA6	B	270	278	Right-handed alpha
Helix 7	AA7	B	286	299	Right-handed alpha
Helix 8	AA8	C	45	60	Right-handed alpha
Helix 9	AA9	C	89	94	Right-handed alpha
Helix 10	AB1	C	104	110	Right-handed alpha
Helix 11	AB2	C	180	193	Right-handed alpha
Helix 12	AB3	C	237	245	Right-handed alpha
Helix 13	AB4	C	270	278	Right-handed alpha
Helix 14	AB5	C	286	299	Right-handed alpha
Helix 15	AB6	E	45	60	Right-handed alpha
Helix 16	AB7	E	104	110	Right-handed alpha
Helix 17	AB8	E	180	194	Right-handed alpha
Helix 18	AB9	E	237	242	Right-handed alpha
Helix 19	AC1	E	270	278	Right-handed alpha
Helix 20	AC2	E	286	299	Right-handed alpha
Helix 21	AC3	F	45	60	Right-handed alpha
Helix 22	AC4	F	90	95	Right-handed alpha
Helix 23	AC5	F	104	110	Right-handed alpha
Helix 24	AC6	F	181	194	Right-handed alpha
Helix 25	AC7	F	236	240	Right-handed 310
Helix 26	AC8	F	241	246	Right-handed alpha
Helix 27	AC9	F	255	259	Right-handed 310
Helix 28	AD1	F	263	267	Right-handed 310
Helix 29	AD2	F	270	278	Right-handed alpha
Helix 30	AD3	F	286	299	Right-handed alpha
Helix 31	AD4	G	45	60	Right-handed alpha
Helix 32	AD5	G	89	94	Right-handed alpha
Helix 33	AD6	G	104	110	Right-handed alpha
Helix 34	AD7	G	180	194	Right-handed alpha
Helix 35	AD8	G	236	239	Right-handed 310
Helix 36	AD9	G	240	247	Right-handed alpha
Helix 37	AE1	G	262	267	Right-handed 310
Helix 38	AE2	G	270	277	Right-handed alpha
Helix 39	AE3	G	286	299	Right-handed alpha
Helix 40	AE4	H	45	60	Right-handed alpha
Helix 41	AE5	H	89	94	Right-handed alpha
Helix 42	AE6	H	104	110	Right-handed alpha
Helix 43	AE7	H	180	194	Right-handed alpha
Helix 44	AE8	H	237	246	Right-handed alpha
Helix 45	AE9	H	263	267	Right-handed 310
Helix 46	AF1	H	270	278	Right-handed alpha
Helix 47	AF2	H	286	299	Right-handed alpha
Helix 48	AF3	I	45	60	Right-handed alpha
Helix 49	AF4	I	104	110	Right-handed alpha
Helix 50	AF5	I	180	193	Right-handed alpha
Helix 51	AF6	I	238	246	Right-handed alpha
Helix 52	AF7	I	262	267	Right-handed 310
Helix 53	AF8	I	270	278	Right-handed alpha
Helix 54	AF9	I	286	299	Right-handed alpha
Helix 55	AG1	J	9	31	Right-handed alpha
Helix 56	AG2	J	34	38	Right-handed 310
Helix 57	AG3	J	41	66	Right-handed alpha
Helix 58	AG4	J	68	80	Right-handed alpha
Helix 59	AG5	J	88	99	Right-handed alpha
Helix 60	AG6	J	100	113	Right-handed alpha
Helix 61	AG7	K	11	31	Right-handed alpha
Helix 62	AG8	K	34	38	Right-handed 310
Helix 63	AG9	K	41	65	Right-handed alpha
Helix 64	AH1	K	69	80	Right-handed alpha
Helix 65	AH2	K	88	95	Right-handed alpha
Helix 66	AH3	K	95	114	Right-handed alpha
Helix 67	AH4	N	11	32	Right-handed alpha
Helix 68	AH5	N	34	41	Right-handed alpha
Helix 69	AH6	N	41	64	Right-handed alpha
Helix 70	AH7	N	68	78	Right-handed alpha
Helix 71	AH8	N	79	81	Right-handed 310
Helix 72	AH9	N	90	100	Right-handed alpha
Helix 73	AI1	N	101	114	Right-handed alpha
Helix 74	AI2	O	12	30	Right-handed alpha
Helix 75	AI3	O	43	64	Right-handed alpha
Helix 76	AI4	O	84	98	Right-handed alpha
Helix 77	AI5	O	98	114	Right-handed alpha
Helix 78	AI6	A	40	53	Right-handed alpha
Helix 79	AI7	A	139	148	Right-handed alpha
Helix 80	AI8	A	228	232	Right-handed 310

There are 25 sheets in PDB entry 8H7Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	171	174	anti-parallel
Strand 3	B	121	122	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	125	126	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	76	78	anti-parallel
Strand 3	C	143	144	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	171	174	anti-parallel
Strand 3	C	121	122	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	164	165	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	159	160	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	77	78	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	171	174	anti-parallel
Strand 3	E	121	122	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	164	165	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	29	first strand
Strand 2	E	159	160	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	68	first strand
Strand 2	E	77	78	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	10	first strand
Strand 2	F	169	174	anti-parallel
Strand 3	F	120	122	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	16	first strand
Strand 2	F	164	165	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	68	first strand
Strand 2	F	77	78	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	140	first strand
Strand 2	F	156	160	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	10	first strand
Strand 2	G	169	174	anti-parallel
Strand 3	G	121	122	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	17	first strand
Strand 2	G	163	165	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	68	first strand
Strand 2	G	76	78	anti-parallel
Strand 3	H	143	144	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	10	first strand
Strand 2	H	169	174	anti-parallel
Strand 3	H	120	122	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	17	first strand
Strand 2	H	163	165	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	44	first strand
Strand 2	H	125	126	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	68	first strand
Strand 2	H	77	78	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	120	121	first strand
Strand 2	I	169	174	anti-parallel
Strand 3	I	5	10	anti-parallel
Strand 4	I	215	218	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	136	137	first strand
Strand 2	I	159	160	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	95	first strand
Strand 2	A	119	126	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H7Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H7Q