Analysis of interatomic Contacts of Structural Units in PDB entry:
8H8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H8A entry

There are 2 chains in PDB entry 8H8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 149PHE 1131
B
 CYS 1133ASP 1216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 8H8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
380 384Right-handed 310
Helix 2
AA2
B
1139 1148Right-handed alpha
Helix 3
AA3
B
1154 1165Right-handed alpha
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There are 15 sheets in PDB entry 8H8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
176 180anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 270first strand
Strand 2
A
275 280anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
A
297 301anti-parallel
Strand 3
A
306 312anti-parallel
Strand 4
A
318 322anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
362 366anti-parallel
Strand 3
A
372 374anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
386 387anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 403first strand
Strand 2
A
406 410anti-parallel
Strand 3
A
416 421anti-parallel
Strand 4
A
427 430anti-parallel
Strand 5
A
438 442anti-parallel
Strand 6
A
448 452anti-parallel
Strand 7
A
458 464anti-parallel
Strand 8
A
467 473anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 493first strand
Strand 2
A
501 506anti-parallel
Strand 3
A
509 515anti-parallel
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There are 16 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 526first strand
Strand 2
A
532 536anti-parallel
Strand 3
A
543 547anti-parallel
Strand 4
A
553 557anti-parallel
Strand 5
A
563 567anti-parallel
Strand 6
A
573 577anti-parallel
Strand 7
A
583 587anti-parallel
Strand 8
A
596 600anti-parallel
Strand 9
A
607 614anti-parallel
Strand 10
A
620 625anti-parallel
Strand 11
A
628 633anti-parallel
Strand 12
A
642 644anti-parallel
Strand 13
A
650 656anti-parallel
Strand 14
A
660 665anti-parallel
Strand 15
A
671 676anti-parallel
Strand 16
A
682 686anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 697first strand
Strand 2
A
703 705anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
715 717first strand
Strand 2
A
723 726anti-parallel
Strand 3
A
737 739anti-parallel
Strand 4
A
749 751anti-parallel
Strand 5
A
756 760anti-parallel
Strand 6
A
769 772anti-parallel
Strand 7
A
775 776anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
780 781first strand
Strand 2
A
787 788anti-parallel
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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
791 792first strand
Strand 2
A
796 802anti-parallel
Strand 3
A
808 813anti-parallel
Strand 4
A
821 825anti-parallel
Strand 5
A
831 835anti-parallel
Strand 6
A
840 845anti-parallel
Strand 7
A
851 855anti-parallel
Strand 8
A
860 865anti-parallel
Strand 9
A
871 876anti-parallel
Strand 10
A
880 886anti-parallel
Strand 11
A
892 896anti-parallel
Strand 12
A
901 903anti-parallel
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There are 15 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
926 927first strand
Strand 2
A
930 934anti-parallel
Strand 3
A
940 944anti-parallel
Strand 4
A
949 954anti-parallel
Strand 5
A
960 964anti-parallel
Strand 6
A
970 974anti-parallel
Strand 7
A
980 984anti-parallel
Strand 8
A
989 995anti-parallel
Strand 9
A
998 1003anti-parallel
Strand 10
A
1008 1013anti-parallel
Strand 11
A
1020 1025anti-parallel
Strand 12
A
1028 1034anti-parallel
Strand 13
A
1040 1044anti-parallel
Strand 14
A
1050 1056anti-parallel
Strand 15
A
1062 1067anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1079 1080first strand
Strand 2
A
1087 1088anti-parallel
Strand 3
A
1093 1094anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1125 1126first strand
Strand 2
B
1188 1189anti-parallel
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