Analysis of interatomic Contacts of Structural Units in PDB entry:
8H8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H8B entry

There is 1 chain in PDB entry 8H8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 146GLU 1172
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8H8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
380 384Right-handed 310
Helix 2
AA2
A
1107 1112Right-handed alpha
Helix 3
AA3
A
1139 1144Right-handed 310
Helix 4
AA4
A
1154 1165Right-handed alpha
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There are 17 sheets in PDB entry 8H8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 170first strand
Strand 2
A
176 182anti-parallel
Strand 3
A
196 198anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
225 229anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 251first strand
Strand 2
A
254 258anti-parallel
Strand 3
A
266 269anti-parallel
Strand 4
A
274 276anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
297 298anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
305 308anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 335first strand
Strand 2
A
341 343anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 356first strand
Strand 2
A
362 366anti-parallel
Strand 3
A
373 374anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
386 387anti-parallel
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There are 13 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
406 409anti-parallel
Strand 3
A
417 421anti-parallel
Strand 4
A
427 431anti-parallel
Strand 5
A
437 442anti-parallel
Strand 6
A
448 452anti-parallel
Strand 7
A
458 463anti-parallel
Strand 8
A
469 474anti-parallel
Strand 9
A
479 484anti-parallel
Strand 10
A
490 494anti-parallel
Strand 11
A
500 505anti-parallel
Strand 12
A
511 515anti-parallel
Strand 13
A
521 522anti-parallel
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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 547first strand
Strand 2
A
553 557anti-parallel
Strand 3
A
563 567anti-parallel
Strand 4
A
573 577anti-parallel
Strand 5
A
582 588anti-parallel
Strand 6
A
594 601anti-parallel
Strand 7
A
609 614anti-parallel
Strand 8
A
620 624anti-parallel
Strand 9
A
629 633anti-parallel
Strand 10
A
642 645anti-parallel
Strand 11
A
649 655anti-parallel
Strand 12
A
661 665anti-parallel
Strand 13
A
671 676anti-parallel
Strand 14
A
682 686anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 697first strand
Strand 2
A
703 705anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
716 717first strand
Strand 2
A
723 726anti-parallel
Strand 3
A
737 739anti-parallel
Strand 4
A
750 751anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 763first strand
Strand 2
A
766 772anti-parallel
Strand 3
A
775 778anti-parallel
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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 803first strand
Strand 2
A
807 812anti-parallel
Strand 3
A
821 825anti-parallel
Strand 4
A
831 836anti-parallel
Strand 5
A
839 845anti-parallel
Strand 6
A
851 855anti-parallel
Strand 7
A
860 865anti-parallel
Strand 8
A
871 876anti-parallel
Strand 9
A
880 886anti-parallel
Strand 10
A
892 896anti-parallel
Strand 11
A
901 903anti-parallel
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There are 16 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
918 919first strand
Strand 2
A
924 927anti-parallel
Strand 3
A
930 933anti-parallel
Strand 4
A
942 944anti-parallel
Strand 5
A
949 954anti-parallel
Strand 6
A
960 964anti-parallel
Strand 7
A
970 974anti-parallel
Strand 8
A
980 984anti-parallel
Strand 9
A
989 995anti-parallel
Strand 10
A
998 1003anti-parallel
Strand 11
A
1008 1010anti-parallel
Strand 12
A
1023 1025anti-parallel
Strand 13
A
1028 1034anti-parallel
Strand 14
A
1040 1045anti-parallel
Strand 15
A
1050 1056anti-parallel
Strand 16
A
1062 1067anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1013 1014first strand
Strand 2
A
1017 1020anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1079 1081first strand
Strand 2
A
1086 1088anti-parallel
Strand 3
A
1093 1095anti-parallel
Strand 4
A
1100 1101anti-parallel
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