Analysis of interatomic Contacts of Structural Units in PDB entry:
8H8C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H8C entry

There are 4 chains in PDB entry 8H8C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 149	PHE 1131
C	CYS 1133	ASP 1216
A	GLU 149	PHE 1131
D	CYS 1133	ASP 1216

There are 5 helices in PDB entry 8H8C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	1139	1148	Right-handed alpha
Helix 2	AA2	C	1154	1162	Right-handed alpha
Helix 3	AA3	C	1163	1166	Right-handed 310
Helix 4	AA4	D	1139	1148	Right-handed alpha
Helix 5	AA5	D	1154	1162	Right-handed alpha

There are 36 sheets in PDB entry 8H8C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	170	first strand
Strand 2	B	176	180	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	270	first strand
Strand 2	B	275	277	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	291	first strand
Strand 2	B	297	301	anti-parallel
Strand 3	B	306	312	anti-parallel
Strand 4	B	318	322	anti-parallel
Strand 5	B	331	332	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	335	first strand
Strand 2	B	341	343	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	356	first strand
Strand 2	B	362	366	anti-parallel
Strand 3	B	372	377	anti-parallel
Strand 4	B	386	390	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	402	first strand
Strand 2	B	406	410	anti-parallel
Strand 3	B	416	420	anti-parallel
Strand 4	B	429	431	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	442	first strand
Strand 2	B	448	452	anti-parallel
Strand 3	B	458	464	anti-parallel
Strand 4	B	467	474	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	515	first strand
Strand 2	B	521	526	anti-parallel
Strand 3	B	532	537	anti-parallel
Strand 4	B	540	547	anti-parallel
Strand 5	B	553	557	anti-parallel
Strand 6	B	563	567	anti-parallel
Strand 7	B	573	577	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	587	first strand
Strand 2	B	596	599	anti-parallel
Strand 3	B	607	614	anti-parallel
Strand 4	B	620	624	anti-parallel
Strand 5	B	629	633	anti-parallel
Strand 6	B	642	644	anti-parallel
Strand 7	B	650	652	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	661	663	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	676	first strand
Strand 2	B	682	686	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	696	697	first strand
Strand 2	B	703	705	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	715	717	first strand
Strand 2	B	723	726	anti-parallel
Strand 3	B	737	739	anti-parallel
Strand 4	B	749	751	anti-parallel
Strand 5	B	757	758	anti-parallel
Strand 6	B	771	772	anti-parallel

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There are 13 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	778	781	first strand
Strand 2	B	787	792	anti-parallel
Strand 3	B	796	803	anti-parallel
Strand 4	B	807	813	anti-parallel
Strand 5	B	821	825	anti-parallel
Strand 6	B	831	835	anti-parallel
Strand 7	B	840	845	anti-parallel
Strand 8	B	851	855	anti-parallel
Strand 9	B	860	865	anti-parallel
Strand 10	B	871	876	anti-parallel
Strand 11	B	880	886	anti-parallel
Strand 12	B	892	896	anti-parallel
Strand 13	B	901	903	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	926	927	first strand
Strand 2	B	930	934	anti-parallel
Strand 3	B	940	944	anti-parallel
Strand 4	B	949	954	anti-parallel
Strand 5	B	960	964	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	971	974	first strand
Strand 2	B	980	984	anti-parallel
Strand 3	B	989	995	anti-parallel
Strand 4	B	998	1003	anti-parallel
Strand 5	B	1008	1013	anti-parallel
Strand 6	B	1020	1025	anti-parallel
Strand 7	B	1028	1034	anti-parallel
Strand 8	B	1040	1045	anti-parallel
Strand 9	B	1050	1053	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1087	1088	first strand
Strand 2	B	1093	1094	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1125	1126	first strand
Strand 2	C	1188	1189	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	170	first strand
Strand 2	A	176	179	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	270	first strand
Strand 2	A	275	277	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	291	first strand
Strand 2	A	297	301	anti-parallel
Strand 3	A	306	312	anti-parallel
Strand 4	A	318	322	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	362	366	anti-parallel
Strand 3	A	372	374	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	377	first strand
Strand 2	A	386	387	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	403	first strand
Strand 2	A	406	410	anti-parallel
Strand 3	A	416	421	anti-parallel
Strand 4	A	427	431	anti-parallel
Strand 5	A	437	442	anti-parallel
Strand 6	A	448	452	anti-parallel
Strand 7	A	458	464	anti-parallel
Strand 8	A	467	474	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	494	first strand
Strand 2	A	500	502	anti-parallel

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There are 14 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	515	first strand
Strand 2	A	521	526	anti-parallel
Strand 3	A	532	537	anti-parallel
Strand 4	A	540	547	anti-parallel
Strand 5	A	553	557	anti-parallel
Strand 6	A	563	567	anti-parallel
Strand 7	A	573	577	anti-parallel
Strand 8	A	583	587	anti-parallel
Strand 9	A	596	599	anti-parallel
Strand 10	A	607	614	anti-parallel
Strand 11	A	620	624	anti-parallel
Strand 12	A	629	633	anti-parallel
Strand 13	A	642	644	anti-parallel
Strand 14	A	650	652	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	661	663	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	676	first strand
Strand 2	A	682	686	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	696	697	first strand
Strand 2	A	703	705	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	725	726	first strand
Strand 2	A	737	738	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	751	first strand
Strand 2	A	756	761	anti-parallel
Strand 3	A	767	772	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	780	781	first strand
Strand 2	A	787	788	anti-parallel

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There are 12 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	791	792	first strand
Strand 2	A	796	802	anti-parallel
Strand 3	A	808	813	anti-parallel
Strand 4	A	821	825	anti-parallel
Strand 5	A	831	835	anti-parallel
Strand 6	A	840	845	anti-parallel
Strand 7	A	851	855	anti-parallel
Strand 8	A	860	865	anti-parallel
Strand 9	A	871	876	anti-parallel
Strand 10	A	880	886	anti-parallel
Strand 11	A	892	896	anti-parallel
Strand 12	A	902	903	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	926	927	first strand
Strand 2	A	930	934	anti-parallel
Strand 3	A	940	944	anti-parallel
Strand 4	A	949	954	anti-parallel
Strand 5	A	960	964	anti-parallel

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There are 10 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	973	first strand
Strand 2	A	982	984	anti-parallel
Strand 3	A	989	994	anti-parallel
Strand 4	A	999	1003	anti-parallel
Strand 5	A	1008	1013	anti-parallel
Strand 6	A	1020	1025	anti-parallel
Strand 7	A	1028	1034	anti-parallel
Strand 8	A	1040	1044	anti-parallel
Strand 9	A	1050	1053	anti-parallel
Strand 10	A	1066	1067	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1125	1126	first strand
Strand 2	D	1188	1189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H8C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H8C