Analysis of interatomic Contacts of Structural Units in PDB entry:
8H8D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H8D entry

There are 3 chains in PDB entry 8H8D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 56	LYS 343
B	ARG 60	LYS 342
C	THR 61	ALA 345

There are 14 helices in PDB entry 8H8D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	99	Right-handed alpha
Helix 2	AA2	A	210	215	Right-handed alpha
Helix 3	AA3	A	217	229	Right-handed alpha
Helix 4	AA4	A	252	254	Right-handed 310
Helix 5	AA5	A	304	343	Right-handed alpha
Helix 6	AA6	B	61	97	Right-handed alpha
Helix 7	AA7	B	208	215	Right-handed alpha
Helix 8	AA8	B	217	223	Right-handed alpha
Helix 9	AA9	B	304	342	Right-handed alpha
Helix 10	AB1	C	62	68	Right-handed alpha
Helix 11	AB2	C	69	99	Right-handed alpha
Helix 12	AB3	C	208	215	Right-handed alpha
Helix 13	AB4	C	217	229	Right-handed alpha
Helix 14	AB5	C	306	344	Right-handed alpha

There are 11 sheets in PDB entry 8H8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	107	first strand
Strand 2	A	294	300	anti-parallel
Strand 3	A	239	250	parallel
Strand 4	A	282	289	parallel
Strand 5	A	185	190	anti-parallel
Strand 6	A	125	129	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	107	first strand
Strand 2	A	294	300	anti-parallel
Strand 3	A	239	250	parallel
Strand 4	A	256	267	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	171	174	anti-parallel
Strand 3	A	116	119	anti-parallel
Strand 4	A	201	206	anti-parallel
Strand 5	A	232	234	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	108	first strand
Strand 2	B	293	300	anti-parallel
Strand 3	B	243	250	parallel
Strand 4	B	256	263	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	159	first strand
Strand 2	B	167	173	anti-parallel
Strand 3	B	116	120	anti-parallel
Strand 4	B	200	206	anti-parallel
Strand 5	B	233	235	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	131	first strand
Strand 2	B	185	191	anti-parallel
Strand 3	B	281	286	anti-parallel
Strand 4	B	238	241	parallel
Strand 5	B	266	268	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	108	first strand
Strand 2	C	293	298	anti-parallel
Strand 3	C	239	250	parallel
Strand 4	C	284	289	parallel
Strand 5	C	184	190	anti-parallel
Strand 6	C	125	132	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	108	first strand
Strand 2	C	293	298	anti-parallel
Strand 3	C	239	250	parallel
Strand 4	C	256	267	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	120	first strand
Strand 2	C	201	205	anti-parallel
Strand 3	C	233	234	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	171	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	167	168	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H8D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H8D