Analysis of interatomic Contacts of Structural Units in PDB entry:
8H8E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H8E entry

There are 7 chains in PDB entry 8H8E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 56	LYS 343
B	ARG 60	LYS 342
C	THR 61	ALA 345
D	PHE 58	HIS 350
E	VAL 56	ARG 344
F	PHE 58	LYS 342
G	U 1	A 75

There are 29 helices in PDB entry 8H8E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	99	Right-handed alpha
Helix 2	AA2	A	208	215	Right-handed alpha
Helix 3	AA3	A	217	229	Right-handed alpha
Helix 4	AA4	A	304	343	Right-handed alpha
Helix 5	AA5	B	61	99	Right-handed alpha
Helix 6	AA6	B	209	214	Right-handed alpha
Helix 7	AA7	B	217	224	Right-handed alpha
Helix 8	AA8	B	304	307	Right-handed 310
Helix 9	AA9	B	308	334	Right-handed alpha
Helix 10	AB1	B	334	342	Right-handed alpha
Helix 11	AB2	C	62	68	Right-handed alpha
Helix 12	AB3	C	69	99	Right-handed alpha
Helix 13	AB4	C	208	215	Right-handed alpha
Helix 14	AB5	C	218	226	Right-handed alpha
Helix 15	AB6	C	306	345	Right-handed alpha
Helix 16	AB7	D	59	99	Right-handed alpha
Helix 17	AB8	D	209	214	Right-handed alpha
Helix 18	AB9	D	218	224	Right-handed alpha
Helix 19	AC1	D	224	229	Right-handed alpha
Helix 20	AC2	D	304	349	Right-handed alpha
Helix 21	AC3	E	57	99	Right-handed alpha
Helix 22	AC4	E	208	215	Right-handed alpha
Helix 23	AC5	E	217	229	Right-handed alpha
Helix 24	AC6	E	275	279	Right-handed 310
Helix 25	AC7	E	304	342	Right-handed alpha
Helix 26	AC8	F	60	96	Right-handed alpha
Helix 27	AC9	F	209	214	Right-handed alpha
Helix 28	AD1	F	217	229	Right-handed alpha
Helix 29	AD2	F	304	342	Right-handed alpha

There are 29 sheets in PDB entry 8H8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	108	first strand
Strand 2	A	284	300	anti-parallel
Strand 3	A	185	190	anti-parallel
Strand 4	A	125	130	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	108	first strand
Strand 2	A	284	300	anti-parallel
Strand 3	A	238	250	parallel
Strand 4	A	257	268	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	158	first strand
Strand 2	A	168	174	anti-parallel
Strand 3	A	116	119	anti-parallel
Strand 4	A	200	206	anti-parallel
Strand 5	A	232	235	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	104	first strand
Strand 2	B	293	300	anti-parallel
Strand 3	B	240	250	parallel
Strand 4	B	256	265	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	293	300	anti-parallel
Strand 3	B	240	250	parallel
Strand 4	B	285	286	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	201	206	anti-parallel
Strand 3	B	233	234	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	189	191	anti-parallel
Strand 3	B	281	283	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	132	first strand
Strand 2	B	184	186	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	159	first strand
Strand 2	B	167	173	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	108	first strand
Strand 2	C	293	300	anti-parallel
Strand 3	C	245	250	parallel
Strand 4	C	256	261	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	117	first strand
Strand 2	C	205	206	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	132	first strand
Strand 2	C	184	189	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	171	172	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	167	168	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	201	first strand
Strand 2	C	234	235	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	265	first strand
Strand 2	C	240	242	anti-parallel
Strand 3	C	285	287	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	105	first strand
Strand 2	D	295	298	anti-parallel
Strand 3	D	239	249	parallel
Strand 4	D	281	289	parallel
Strand 5	D	186	191	anti-parallel
Strand 6	D	125	128	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	105	first strand
Strand 2	D	295	298	anti-parallel
Strand 3	D	239	249	parallel
Strand 4	D	257	265	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	174	first strand
Strand 2	D	116	119	anti-parallel
Strand 3	D	201	206	anti-parallel
Strand 4	D	232	234	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	159	first strand
Strand 2	D	167	168	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	108	first strand
Strand 2	E	293	300	anti-parallel
Strand 3	E	240	249	parallel
Strand 4	E	257	263	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	108	first strand
Strand 2	E	293	300	anti-parallel
Strand 3	E	240	249	parallel
Strand 4	E	285	289	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	120	first strand
Strand 2	E	202	204	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	154	first strand
Strand 2	E	172	173	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	107	first strand
Strand 2	F	294	301	anti-parallel
Strand 3	F	243	248	parallel
Strand 4	F	258	261	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	107	first strand
Strand 2	F	294	301	anti-parallel
Strand 3	F	243	248	parallel
Strand 4	F	288	289	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	117	120	first strand
Strand 2	F	200	205	anti-parallel
Strand 3	F	234	235	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	132	first strand
Strand 2	F	184	185	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	239	240	first strand
Strand 2	F	284	285	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H8E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H8E