Analysis of interatomic Contacts of Structural Units in PDB entry:
8H8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H8F entry

There are 3 chains in PDB entry 8H8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 97SER 347
B
 MET 97SER 347
C
 MET 97SER 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8H8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 117Right-handed alpha
Helix 2
AA2
A
227 232Right-handed alpha
Helix 3
AA3
A
236 247Right-handed alpha
Helix 4
AA4
A
322 347Right-handed alpha
Helix 5
AA5
B
98 117Right-handed alpha
Helix 6
AA6
B
227 232Right-handed alpha
Helix 7
AA7
B
236 247Right-handed alpha
Helix 8
AA8
B
322 347Right-handed alpha
Helix 9
AA9
C
98 117Right-handed alpha
Helix 10
AB1
C
227 232Right-handed alpha
Helix 11
AB2
C
236 247Right-handed alpha
Helix 12
AB3
C
322 347Right-handed alpha
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There are 12 sheets in PDB entry 8H8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 125first strand
Strand 2
A
312 318anti-parallel
Strand 3
A
257 268parallel
Strand 4
A
300 307parallel
Strand 5
A
202 208anti-parallel
Strand 6
A
143 150anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 125first strand
Strand 2
A
312 318anti-parallel
Strand 3
A
257 268parallel
Strand 4
A
275 285anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
A
189 192anti-parallel
Strand 3
A
134 137anti-parallel
Strand 4
A
221 224anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 219first strand
Strand 2
A
252 253anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 125first strand
Strand 2
B
312 318anti-parallel
Strand 3
B
257 268parallel
Strand 4
B
299 307parallel
Strand 5
B
202 209anti-parallel
Strand 6
B
148 150anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
202 209anti-parallel
Strand 3
B
299 307anti-parallel
Strand 4
B
257 268parallel
Strand 5
B
275 285anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
187 192anti-parallel
Strand 3
B
134 137anti-parallel
Strand 4
B
221 224anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 219first strand
Strand 2
B
252 253anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 123first strand
Strand 2
C
313 318anti-parallel
Strand 3
C
257 268parallel
Strand 4
C
299 307parallel
Strand 5
C
202 209anti-parallel
Strand 6
C
144 150anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 123first strand
Strand 2
C
313 318anti-parallel
Strand 3
C
257 268parallel
Strand 4
C
275 285anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 175first strand
Strand 2
C
187 192anti-parallel
Strand 3
C
134 137anti-parallel
Strand 4
C
221 224anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 219first strand
Strand 2
C
252 253anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il