Analysis of interatomic Contacts of Structural Units in PDB entry:
8H8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H8P entry

There are 4 chains in PDB entry 8H8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ARG -3PHE 351
A
 SER -1PHE 351
C
 HIS 0PHE 351
D
 HIS 0THR 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8H8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
5 17Right-handed alpha
Helix 2
AA2
B
18 25Right-handed alpha
Helix 3
AA3
B
25 40Right-handed alpha
Helix 4
AA4
B
40 45Right-handed alpha
Helix 5
AA5
B
81 87Right-handed alpha
Helix 6
AA6
B
111 131Right-handed alpha
Helix 7
AA7
B
148 162Right-handed alpha
Helix 8
AA8
B
175 190Right-handed alpha
Helix 9
AA9
B
206 212Right-handed alpha
Helix 10
AB1
B
228 232Right-handed 310
Helix 11
AB2
B
256 266Right-handed alpha
Helix 12
AB3
B
274 282Right-handed alpha
Helix 13
AB4
B
282 287Right-handed alpha
Helix 14
AB5
B
291 293Right-handed 310
Helix 15
AB6
B
299 303Right-handed 310
Helix 16
AB7
B
306 310Right-handed 310
Helix 17
AB8
B
325 340Right-handed alpha
Helix 18
AB9
B
341 345Right-handed 310
Helix 19
AC1
A
5 17Right-handed alpha
Helix 20
AC2
A
18 25Right-handed alpha
Helix 21
AC3
A
25 40Right-handed alpha
Helix 22
AC4
A
40 45Right-handed alpha
Helix 23
AC5
A
81 87Right-handed alpha
Helix 24
AC6
A
111 131Right-handed alpha
Helix 25
AC7
A
147 162Right-handed alpha
Helix 26
AC8
A
175 190Right-handed alpha
Helix 27
AC9
A
202 212Right-handed alpha
Helix 28
AD1
A
228 232Right-handed 310
Helix 29
AD2
A
256 266Right-handed alpha
Helix 30
AD3
A
274 282Right-handed alpha
Helix 31
AD4
A
282 287Right-handed alpha
Helix 32
AD5
A
291 293Right-handed 310
Helix 33
AD6
A
299 303Right-handed 310
Helix 34
AD7
A
325 338Right-handed alpha
Helix 35
AD8
A
341 345Right-handed 310
Helix 36
AD9
C
5 17Right-handed alpha
Helix 37
AE1
C
18 25Right-handed alpha
Helix 38
AE2
C
25 40Right-handed alpha
Helix 39
AE3
C
40 45Right-handed alpha
Helix 40
AE4
C
81 87Right-handed alpha
Helix 41
AE5
C
111 131Right-handed alpha
Helix 42
AE6
C
147 162Right-handed alpha
Helix 43
AE7
C
175 190Right-handed alpha
Helix 44
AE8
C
202 212Right-handed alpha
Helix 45
AE9
C
228 232Right-handed 310
Helix 46
AF1
C
256 266Right-handed alpha
Helix 47
AF2
C
274 282Right-handed alpha
Helix 48
AF3
C
282 287Right-handed alpha
Helix 49
AF4
C
291 293Right-handed 310
Helix 50
AF5
C
298 302Right-handed alpha
Helix 51
AF6
C
325 340Right-handed alpha
Helix 52
AF7
C
341 345Right-handed 310
Helix 53
AF8
D
5 17Right-handed alpha
Helix 54
AF9
D
18 25Right-handed alpha
Helix 55
AG1
D
25 40Right-handed alpha
Helix 56
AG2
D
40 45Right-handed alpha
Helix 57
AG3
D
111 131Right-handed alpha
Helix 58
AG4
D
147 162Right-handed alpha
Helix 59
AG5
D
175 190Right-handed alpha
Helix 60
AG6
D
202 212Right-handed alpha
Helix 61
AG7
D
228 232Right-handed 310
Helix 62
AG8
D
256 266Right-handed alpha
Helix 63
AG9
D
274 282Right-handed alpha
Helix 64
AH1
D
282 287Right-handed alpha
Helix 65
AH2
D
291 293Right-handed 310
Helix 66
AH3
D
298 302Right-handed alpha
Helix 67
AH4
D
325 340Right-handed alpha
Helix 68
AH5
D
341 345Right-handed 310
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There are 8 sheets in PDB entry 8H8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
61 68anti-parallel
Strand 3
B
73 80anti-parallel
Strand 4
B
92 98anti-parallel
Strand 5
B
105 110anti-parallel
Strand 6
B
1 4parallel
Strand 7
B
346 348anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 199first strand
Strand 2
B
168 173parallel
Strand 3
B
141 145parallel
Strand 4
B
213 218parallel
Strand 5
B
240 244parallel
Strand 6
B
317 321parallel
Strand 7
B
270 272parallel
Strand 8
B
295 297parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
73 80anti-parallel
Strand 4
A
92 98anti-parallel
Strand 5
A
105 110anti-parallel
Strand 6
A
0 4parallel
Strand 7
A
346 349anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
168 173parallel
Strand 3
A
141 145parallel
Strand 4
A
213 218parallel
Strand 5
A
240 244parallel
Strand 6
A
317 321parallel
Strand 7
A
270 272parallel
Strand 8
A
295 297parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 52first strand
Strand 2
C
61 68anti-parallel
Strand 3
C
73 80anti-parallel
Strand 4
C
92 98anti-parallel
Strand 5
C
105 110anti-parallel
Strand 6
C
1 4parallel
Strand 7
C
346 348anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 199first strand
Strand 2
C
168 173parallel
Strand 3
C
141 146parallel
Strand 4
C
213 219parallel
Strand 5
C
240 244parallel
Strand 6
C
317 321parallel
Strand 7
C
270 272parallel
Strand 8
C
295 297parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 52first strand
Strand 2
D
61 68anti-parallel
Strand 3
D
73 80anti-parallel
Strand 4
D
92 98anti-parallel
Strand 5
D
105 110anti-parallel
Strand 6
D
1 4parallel
Strand 7
D
346 348anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
194 199first strand
Strand 2
D
168 173parallel
Strand 3
D
141 145parallel
Strand 4
D
213 218parallel
Strand 5
D
240 244parallel
Strand 6
D
317 321parallel
Strand 7
D
270 272parallel
Strand 8
D
295 297parallel
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