Analysis of interatomic Contacts of Structural Units in PDB entry:
8H8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H8Y entry

There are 4 chains in PDB entry 8H8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 246
B
 SER 2ALA 246
C
 ASN 3ALA 246
D
 ASN 3ALA 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8H8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 27Right-handed alpha
Helix 2
AA2
A
37 47Right-handed alpha
Helix 3
AA3
A
62 78Right-handed alpha
Helix 4
AA4
A
94 98Right-handed 310
Helix 5
AA5
A
99 111Right-handed alpha
Helix 6
AA6
A
111 129Right-handed alpha
Helix 7
AA7
A
138 143Right-handed 310
Helix 8
AA8
A
148 170Right-handed alpha
Helix 9
AA9
A
186 192Right-handed alpha
Helix 10
AB1
A
193 195Right-handed 310
Helix 11
AB2
A
197 208Right-handed alpha
Helix 12
AB3
A
215 224Right-handed alpha
Helix 13
AB4
A
225 227Right-handed 310
Helix 14
AB5
B
16 27Right-handed alpha
Helix 15
AB6
B
37 47Right-handed alpha
Helix 16
AB7
B
62 78Right-handed alpha
Helix 17
AB8
B
94 98Right-handed 310
Helix 18
AB9
B
99 111Right-handed alpha
Helix 19
AC1
B
111 129Right-handed alpha
Helix 20
AC2
B
138 143Right-handed 310
Helix 21
AC3
B
148 170Right-handed alpha
Helix 22
AC4
B
171 173Right-handed 310
Helix 23
AC5
B
186 194Right-handed alpha
Helix 24
AC6
B
197 208Right-handed alpha
Helix 25
AC7
B
215 225Right-handed alpha
Helix 26
AC8
C
16 27Right-handed alpha
Helix 27
AC9
C
37 47Right-handed alpha
Helix 28
AD1
C
62 78Right-handed alpha
Helix 29
AD2
C
94 98Right-handed 310
Helix 30
AD3
C
99 111Right-handed alpha
Helix 31
AD4
C
111 129Right-handed alpha
Helix 32
AD5
C
138 143Right-handed 310
Helix 33
AD6
C
148 170Right-handed alpha
Helix 34
AD7
C
186 194Right-handed alpha
Helix 35
AD8
C
197 207Right-handed alpha
Helix 36
AD9
C
215 224Right-handed alpha
Helix 37
AE1
C
225 227Right-handed 310
Helix 38
AE2
D
16 27Right-handed alpha
Helix 39
AE3
D
37 47Right-handed alpha
Helix 40
AE4
D
62 78Right-handed alpha
Helix 41
AE5
D
94 98Right-handed 310
Helix 42
AE6
D
99 111Right-handed alpha
Helix 43
AE7
D
111 128Right-handed alpha
Helix 44
AE8
D
138 143Right-handed 310
Helix 45
AE9
D
148 170Right-handed alpha
Helix 46
AF1
D
171 173Right-handed 310
Helix 47
AF2
D
186 194Right-handed alpha
Helix 48
AF3
D
197 206Right-handed alpha
Helix 49
AF4
D
215 224Right-handed alpha
Helix 50
AF5
D
225 227Right-handed 310
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There are 4 sheets in PDB entry 8H8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
30 34parallel
Strand 3
A
6 9parallel
Strand 4
A
82 85parallel
Strand 5
A
131 136parallel
Strand 6
A
174 181parallel
Strand 7
A
238 241parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
30 34parallel
Strand 3
B
6 9parallel
Strand 4
B
82 85parallel
Strand 5
B
132 136parallel
Strand 6
B
175 181parallel
Strand 7
B
238 241parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 54first strand
Strand 2
C
30 34parallel
Strand 3
C
6 9parallel
Strand 4
C
82 85parallel
Strand 5
C
131 136parallel
Strand 6
C
174 181parallel
Strand 7
C
238 241parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 54first strand
Strand 2
D
30 34parallel
Strand 3
D
6 9parallel
Strand 4
D
82 85parallel
Strand 5
D
132 136parallel
Strand 6
D
175 181parallel
Strand 7
D
238 241parallel
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