Analysis of interatomic Contacts of Structural Units in PDB entry:
8H92


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H92 entry

There are 2 chains in PDB entry 8H92 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 6SER 205
B
 MET 4GLN 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 8H92. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
47 50Right-handed 310
Helix 3
AA3
A
92 102Right-handed alpha
Helix 4
AA4
A
103 108Right-handed 310
Helix 5
AA5
A
111 122Right-handed alpha
Helix 6
AA6
A
167 182Right-handed alpha
Helix 7
AA7
A
192 200Right-handed alpha
Helix 8
AA8
B
14 25Right-handed alpha
Helix 9
AA9
B
47 50Right-handed 310
Helix 10
AB1
B
92 102Right-handed alpha
Helix 11
AB2
B
103 108Right-handed 310
Helix 12
AB3
B
111 121Right-handed alpha
Helix 13
AB4
B
169 182Right-handed alpha
Helix 14
AB5
B
192 200Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8H92. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
80 82anti-parallel
Strand 3
A
7 12anti-parallel
Strand 4
A
156 164anti-parallel
Strand 5
A
144 153anti-parallel
Strand 6
A
126 141anti-parallel
Strand 7
A
29 42anti-parallel
Strand 8
A
52 59anti-parallel
Strand 9
A
65 72anti-parallel
Strand 10
A
85 90anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
80 82anti-parallel
Strand 3
A
7 12anti-parallel
Strand 4
A
186 188anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 188first strand
Strand 2
B
6 12anti-parallel
Strand 3
B
156 164anti-parallel
Strand 4
B
144 153anti-parallel
Strand 5
B
126 141anti-parallel
Strand 6
B
29 42anti-parallel
Strand 7
B
52 59anti-parallel
Strand 8
B
65 77anti-parallel
Strand 9
B
80 90anti-parallel
Strand 10
B
6 12anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il