Analysis of interatomic Contacts of Structural Units in PDB entry:
8H96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H96 entry

There are 3 chains in PDB entry 8H96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 97	ASN 1059
B	ASP 146	TYR 581
C	SER 26	GLU 114

There are 52 helices in PDB entry 8H96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	97	109	Right-handed alpha
Helix 2	AA2	A	121	129	Right-handed alpha
Helix 3	AA3	A	150	163	Right-handed alpha
Helix 4	AA4	A	180	182	Right-handed 310
Helix 5	AA5	A	189	198	Right-handed alpha
Helix 6	AA6	A	201	211	Right-handed alpha
Helix 7	AA7	A	223	227	Right-handed 310
Helix 8	AA8	A	246	255	Right-handed alpha
Helix 9	AA9	A	269	273	Right-handed 310
Helix 10	AB1	A	292	304	Right-handed alpha
Helix 11	AB2	A	309	320	Right-handed alpha
Helix 12	AB3	A	320	327	Right-handed alpha
Helix 13	AB4	A	329	346	Right-handed alpha
Helix 14	AB5	A	356	373	Right-handed alpha
Helix 15	AB6	A	380	401	Right-handed alpha
Helix 16	AB7	A	406	413	Right-handed alpha
Helix 17	AB8	A	416	425	Right-handed alpha
Helix 18	AB9	A	444	459	Right-handed alpha
Helix 19	AC1	A	463	468	Right-handed 310
Helix 20	AC2	A	485	487	Right-handed 310
Helix 21	AC3	A	488	498	Right-handed alpha
Helix 22	AC4	A	500	512	Right-handed alpha
Helix 23	AC5	A	518	532	Right-handed alpha
Helix 24	AC6	A	538	552	Right-handed alpha
Helix 25	AC7	A	554	562	Right-handed alpha
Helix 26	AC8	A	574	586	Right-handed alpha
Helix 27	AC9	A	623	639	Right-handed alpha
Helix 28	AD1	A	653	665	Right-handed alpha
Helix 29	AD2	A	681	683	Right-handed 310
Helix 30	AD3	A	684	693	Right-handed alpha
Helix 31	AD4	A	709	721	Right-handed alpha
Helix 32	AD5	A	738	751	Right-handed alpha
Helix 33	AD6	A	766	779	Right-handed alpha
Helix 34	AD7	A	795	807	Right-handed alpha
Helix 35	AD8	A	823	836	Right-handed alpha
Helix 36	AD9	A	853	865	Right-handed alpha
Helix 37	AE1	A	880	893	Right-handed alpha
Helix 38	AE2	A	909	911	Right-handed 310
Helix 39	AE3	A	912	923	Right-handed alpha
Helix 40	AE4	A	936	949	Right-handed alpha
Helix 41	AE5	A	969	979	Right-handed alpha
Helix 42	AE6	A	994	1006	Right-handed alpha
Helix 43	AE7	A	1018	1022	Right-handed 310
Helix 44	AE8	A	1023	1037	Right-handed alpha
Helix 45	AE9	A	1045	1049	Right-handed 310
Helix 46	AF1	B	157	174	Right-handed alpha
Helix 47	AF2	B	254	258	Right-handed 310
Helix 48	AF3	B	337	341	Right-handed 310
Helix 49	AF4	C	37	41	Right-handed 310
Helix 50	AF5	C	51	58	Right-handed alpha
Helix 51	AF6	C	62	73	Right-handed alpha
Helix 52	AF7	C	94	114	Right-handed alpha

There are 12 sheets in PDB entry 8H96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	178	first strand
Strand 2	A	216	220	parallel
Strand 3	A	263	267	parallel
Strand 4	A	140	145	parallel
Strand 5	A	284	289	parallel
Strand 6	C	28	32	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	188	first strand
Strand 2	A	244	245	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	432	first strand
Strand 2	A	439	441	anti-parallel

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There are 17 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	571	first strand
Strand 2	A	594	597	parallel
Strand 3	A	644	646	parallel
Strand 4	A	673	675	parallel
Strand 5	A	701	702	parallel
Strand 6	A	729	731	parallel
Strand 7	A	757	759	parallel
Strand 8	A	786	788	parallel
Strand 9	A	814	816	parallel
Strand 10	A	843	845	parallel
Strand 11	A	871	873	parallel
Strand 12	A	900	902	parallel
Strand 13	A	929	930	parallel
Strand 14	A	957	959	parallel
Strand 15	A	985	987	parallel
Strand 16	A	1014	1016	parallel
Strand 17	A	1041	1042	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	283	291	parallel
Strand 3	B	573	580	anti-parallel
Strand 4	B	565	569	anti-parallel
Strand 5	B	556	559	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	300	first strand
Strand 2	B	307	312	anti-parallel
Strand 3	B	315	320	anti-parallel
Strand 4	B	333	335	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	351	first strand
Strand 2	B	357	362	anti-parallel
Strand 3	B	369	372	anti-parallel
Strand 4	B	380	382	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	396	first strand
Strand 2	B	401	405	anti-parallel
Strand 3	B	410	415	anti-parallel
Strand 4	B	420	426	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	437	first strand
Strand 2	B	441	445	anti-parallel
Strand 3	B	450	455	anti-parallel
Strand 4	B	460	466	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	476	first strand
Strand 2	B	482	487	anti-parallel
Strand 3	B	492	496	anti-parallel
Strand 4	B	504	505	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	518	first strand
Strand 2	B	524	529	anti-parallel
Strand 3	B	533	538	anti-parallel
Strand 4	B	544	549	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	50	first strand
Strand 2	C	86	92	anti-parallel
Strand 3	C	75	79	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H96

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H96