Analysis of interatomic Contacts of Structural Units in PDB entry:
8H9B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H9B entry

There is 1 chain in PDB entry 8H9B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 242LEU 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8H9B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
243 251Right-handed alpha
Helix 2
AA2
A
267 288Right-handed alpha
Helix 3
AA3
A
301 308Right-handed alpha
Helix 4
AA4
A
308 314Right-handed alpha
Helix 5
AA5
A
315 317Right-handed 310
Helix 6
AA6
A
333 343Right-handed alpha
Helix 7
AA7
A
347 351Right-handed 310
Helix 8
AA8
A
366 370Right-handed 310
Helix 9
AA9
A
389 391Right-handed 310
Helix 10
AB1
A
392 411Right-handed alpha
Helix 11
AB2
A
430 448Right-handed alpha
Helix 12
AB3
A
488 493Right-handed alpha
Helix 13
AB4
A
517 530Right-handed alpha
Helix 14
AB5
A
548 550Right-handed 310
Helix 15
AB6
A
551 565Right-handed alpha
Helix 16
AB7
A
577 588Right-handed alpha
Helix 17
AB8
A
597 604Right-handed alpha
Helix 18
AB9
A
621 634Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8H9B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
265 266anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
353 362parallel
Strand 3
A
378 388anti-parallel
Strand 4
A
508 513anti-parallel
Strand 5
A
477 486anti-parallel
Strand 6
A
465 471anti-parallel
Strand 7
A
416 422anti-parallel
Strand 8
A
452 458parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
326 329anti-parallel
Strand 3
A
319 321anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
504 505anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 572first strand
Strand 2
A
542 546parallel
Strand 3
A
592 596parallel
Strand 4
A
605 610anti-parallel
Strand 5
A
615 620anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il