Analysis of interatomic Contacts of Structural Units in PDB entry:
8H9D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H9D entry

There are 3 chains in PDB entry 8H9D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	LEU 1206
A	LEU 0	LEU 1205
G	A 3	C 23

There are 97 helices in PDB entry 8H9D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1	6	Right-handed 310
Helix 2	AA2	B	25	34	Right-handed alpha
Helix 3	AA3	B	45	66	Right-handed alpha
Helix 4	AA4	B	72	82	Right-handed alpha
Helix 5	AA5	B	89	110	Right-handed alpha
Helix 6	AA6	B	113	117	Right-handed 310
Helix 7	AA7	B	119	123	Right-handed 310
Helix 8	AA8	B	124	129	Right-handed alpha
Helix 9	AA9	B	135	142	Right-handed alpha
Helix 10	AB1	B	146	149	Right-handed 310
Helix 11	AB2	B	150	158	Right-handed alpha
Helix 12	AB3	B	159	162	Right-handed 310
Helix 13	AB4	B	169	176	Right-handed alpha
Helix 14	AB5	B	177	194	Right-handed alpha
Helix 15	AB6	B	195	197	Right-handed 310
Helix 16	AB7	B	206	220	Right-handed 310
Helix 17	AB8	B	221	242	Right-handed alpha
Helix 18	AB9	B	243	246	Right-handed 310
Helix 19	AC1	B	279	299	Right-handed alpha
Helix 20	AC2	B	300	313	Right-handed alpha
Helix 21	AC3	B	378	380	Right-handed 310
Helix 22	AC4	B	390	396	Right-handed alpha
Helix 23	AC5	B	398	410	Right-handed alpha
Helix 24	AC6	B	411	416	Right-handed alpha
Helix 25	AC7	B	429	451	Right-handed alpha
Helix 26	AC8	B	463	478	Right-handed alpha
Helix 27	AC9	B	540	543	Right-handed 310
Helix 28	AD1	B	651	655	Right-handed 310
Helix 29	AD2	B	666	675	Right-handed alpha
Helix 30	AD3	B	697	708	Right-handed alpha
Helix 31	AD4	B	708	713	Right-handed alpha
Helix 32	AD5	B	794	806	Right-handed alpha
Helix 33	AD6	B	884	900	Right-handed alpha
Helix 34	AD7	B	920	937	Right-handed alpha
Helix 35	AD8	B	954	958	Right-handed 310
Helix 36	AD9	B	1005	1014	Right-handed alpha
Helix 37	AE1	B	1035	1037	Right-handed 310
Helix 38	AE2	B	1076	1087	Right-handed alpha
Helix 39	AE3	B	1097	1102	Right-handed alpha
Helix 40	AE4	B	1106	1122	Right-handed alpha
Helix 41	AE5	B	1150	1152	Right-handed 310
Helix 42	AE6	B	1159	1182	Right-handed alpha
Helix 43	AE7	B	1193	1204	Right-handed alpha
Helix 44	AE8	A	1	6	Right-handed 310
Helix 45	AE9	A	25	33	Right-handed alpha
Helix 46	AF1	A	34	65	Right-handed alpha
Helix 47	AF2	A	72	82	Right-handed alpha
Helix 48	AF3	A	88	110	Right-handed alpha
Helix 49	AF4	A	113	117	Right-handed 310
Helix 50	AF5	A	119	129	Right-handed 310
Helix 51	AF6	A	135	142	Right-handed alpha
Helix 52	AF7	A	146	149	Right-handed 310
Helix 53	AF8	A	150	159	Right-handed alpha
Helix 54	AF9	A	160	162	Right-handed 310
Helix 55	AG1	A	169	176	Right-handed alpha
Helix 56	AG2	A	177	194	Right-handed alpha
Helix 57	AG3	A	195	197	Right-handed 310
Helix 58	AG4	A	203	209	Right-handed alpha
Helix 59	AG5	A	210	220	Right-handed 310
Helix 60	AG6	A	221	246	Right-handed alpha
Helix 61	AG7	A	279	300	Right-handed alpha
Helix 62	AG8	A	301	314	Right-handed alpha
Helix 63	AG9	A	377	382	Right-handed alpha
Helix 64	AH1	A	390	416	Right-handed alpha
Helix 65	AH2	A	425	428	Right-handed 310
Helix 66	AH3	A	429	451	Right-handed alpha
Helix 67	AH4	A	463	475	Right-handed alpha
Helix 68	AH5	A	476	478	Right-handed 310
Helix 69	AH6	A	479	493	Right-handed alpha
Helix 70	AH7	A	518	523	Right-handed alpha
Helix 71	AH8	A	540	543	Right-handed 310
Helix 72	AH9	A	568	578	Right-handed alpha
Helix 73	AI1	A	582	587	Right-handed alpha
Helix 74	AI2	A	589	598	Right-handed alpha
Helix 75	AI3	A	608	626	Right-handed alpha
Helix 76	AI4	A	628	633	Right-handed 310
Helix 77	AI5	A	638	642	Right-handed 310
Helix 78	AI6	A	644	656	Right-handed alpha
Helix 79	AI7	A	666	675	Right-handed alpha
Helix 80	AI8	A	685	689	Right-handed 310
Helix 81	AI9	A	697	708	Right-handed alpha
Helix 82	AJ1	A	709	712	Right-handed 310
Helix 83	AJ2	A	750	755	Right-handed alpha
Helix 84	AJ3	A	769	774	Right-handed 310
Helix 85	AJ4	A	794	806	Right-handed alpha
Helix 86	AJ5	A	853	861	Right-handed alpha
Helix 87	AJ6	A	870	899	Right-handed alpha
Helix 88	AJ7	A	920	936	Right-handed alpha
Helix 89	AJ8	A	1010	1014	Right-handed alpha
Helix 90	AJ9	A	1034	1038	Right-handed alpha
Helix 91	AK1	A	1076	1087	Right-handed alpha
Helix 92	AK2	A	1090	1094	Right-handed 310
Helix 93	AK3	A	1097	1103	Right-handed alpha
Helix 94	AK4	A	1107	1122	Right-handed alpha
Helix 95	AK5	A	1150	1152	Right-handed 310
Helix 96	AK6	A	1159	1182	Right-handed alpha
Helix 97	AK7	A	1193	1201	Right-handed alpha

There are 17 sheets in PDB entry 8H9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	657	665	first strand
Strand 2	B	557	565	anti-parallel
Strand 3	B	521	529	anti-parallel
Strand 4	B	500	504	parallel
Strand 5	B	722	728	anti-parallel
Strand 6	B	776	785	anti-parallel
Strand 7	B	718	719	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	657	665	first strand
Strand 2	B	557	565	anti-parallel
Strand 3	B	521	529	anti-parallel
Strand 4	B	532	538	anti-parallel
Strand 5	B	678	684	anti-parallel
Strand 6	B	12	22	anti-parallel
Strand 7	B	776	785	anti-parallel
Strand 8	B	718	719	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	320	first strand
Strand 2	B	375	376	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	833	838	first strand
Strand 2	B	822	827	anti-parallel
Strand 3	B	810	816	anti-parallel
Strand 4	B	901	906	parallel
Strand 5	B	978	981	parallel
Strand 6	B	974	975	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1018	1022	first strand
Strand 2	B	1027	1033	anti-parallel
Strand 3	B	1047	1051	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1055	1059	first strand
Strand 2	B	1071	1075	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1124	1126	first strand
Strand 2	B	1133	1140	anti-parallel
Strand 3	B	1146	1148	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	503	first strand
Strand 2	A	724	728	anti-parallel
Strand 3	A	776	785	anti-parallel
Strand 4	A	12	22	anti-parallel
Strand 5	A	678	684	anti-parallel
Strand 6	A	532	538	anti-parallel
Strand 7	A	524	529	anti-parallel
Strand 8	A	557	565	anti-parallel
Strand 9	A	657	665	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	501	503	first strand
Strand 2	A	724	728	anti-parallel
Strand 3	A	776	785	anti-parallel
Strand 4	A	717	719	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	320	first strand
Strand 2	A	375	376	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	740	first strand
Strand 2	A	766	767	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	747	first strand
Strand 2	A	759	761	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	833	838	first strand
Strand 2	A	822	827	anti-parallel
Strand 3	A	810	816	anti-parallel
Strand 4	A	901	906	parallel
Strand 5	A	978	981	parallel
Strand 6	A	974	975	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	841	843	first strand
Strand 2	A	850	852	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1018	1022	first strand
Strand 2	A	1027	1033	anti-parallel
Strand 3	A	1047	1051	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1055	1058	first strand
Strand 2	A	1072	1075	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1124	1125	first strand
Strand 2	A	1134	1140	anti-parallel
Strand 3	A	1146	1148	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H9D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H9D