Analysis of interatomic Contacts of Structural Units in PDB entry:
8H9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H9F entry

There are 19 chains in PDB entry 8H9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ASP 1	MET 75
2	ASP 1	MET 75
3	ASP 1	MET 75
4	ASP 1	MET 75
5	ASP 1	MET 75
6	ASP 1	MET 75
7	ASP 1	MET 75
8	ASP 1	MET 75
G	ALA 32	THR 222
H	GLN 15	GLU 146
I	VAL 2	VAL 46
K	PRO 3	LYS 97
M	ILE 125	LEU 160
N	ASN 4	THR 226
P	LEU 2	ASP 42
Q	MET 1	SER 38
R	GLU 19	TYR 92
S	LEU 26	VAL 102
T	VAL 2	ALA 45

There are 71 helices in PDB entry 8H9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	2	15	Right-handed alpha
Helix 2	AA2	1	17	39	Right-handed alpha
Helix 3	AA3	1	42	73	Right-handed alpha
Helix 4	AA4	2	2	16	Right-handed alpha
Helix 5	AA5	2	18	39	Right-handed alpha
Helix 6	AA6	2	42	73	Right-handed alpha
Helix 7	AA7	3	2	17	Right-handed alpha
Helix 8	AA8	3	18	39	Right-handed alpha
Helix 9	AA9	3	42	73	Right-handed alpha
Helix 10	AB1	4	2	16	Right-handed alpha
Helix 11	AB2	4	18	39	Right-handed alpha
Helix 12	AB3	4	42	73	Right-handed alpha
Helix 13	AB4	5	2	16	Right-handed alpha
Helix 14	AB5	5	17	39	Right-handed alpha
Helix 15	AB6	5	42	73	Right-handed alpha
Helix 16	AB7	6	2	17	Right-handed alpha
Helix 17	AB8	6	17	39	Right-handed alpha
Helix 18	AB9	6	42	73	Right-handed alpha
Helix 19	AC1	7	2	16	Right-handed alpha
Helix 20	AC2	7	17	39	Right-handed alpha
Helix 21	AC3	7	42	73	Right-handed alpha
Helix 22	AC4	8	2	17	Right-handed alpha
Helix 23	AC5	8	18	39	Right-handed alpha
Helix 24	AC6	8	42	73	Right-handed alpha
Helix 25	AC7	G	33	49	Right-handed alpha
Helix 26	AC8	G	49	55	Right-handed alpha
Helix 27	AC9	G	80	98	Right-handed alpha
Helix 28	AD1	G	109	118	Right-handed alpha
Helix 29	AD2	G	137	150	Right-handed alpha
Helix 30	AD3	G	180	186	Right-handed alpha
Helix 31	AD4	G	187	193	Right-handed 310
Helix 32	AD5	G	197	221	Right-handed alpha
Helix 33	AD6	H	101	103	Right-handed 310
Helix 34	AD7	H	104	122	Right-handed alpha
Helix 35	AD8	H	124	146	Right-handed alpha
Helix 36	AD9	I	3	8	Right-handed alpha
Helix 37	AE1	I	11	26	Right-handed alpha
Helix 38	AE2	I	28	39	Right-handed alpha
Helix 39	AE3	K	19	30	Right-handed alpha
Helix 40	AE4	K	31	48	Right-handed alpha
Helix 41	AE5	K	54	97	Right-handed alpha
Helix 42	AE6	M	131	139	Right-handed alpha
Helix 43	AE7	M	140	143	Right-handed 310
Helix 44	AE8	N	6	10	Right-handed 310
Helix 45	AE9	N	19	26	Right-handed alpha
Helix 46	AF1	N	27	31	Right-handed 310
Helix 47	AF2	N	40	59	Right-handed alpha
Helix 48	AF3	N	64	67	Right-handed 310
Helix 49	AF4	N	68	85	Right-handed alpha
Helix 50	AF5	N	93	96	Right-handed 310
Helix 51	AF6	N	97	119	Right-handed alpha
Helix 52	AF7	N	120	128	Right-handed alpha
Helix 53	AF8	N	134	138	Right-handed 310
Helix 54	AF9	N	139	181	Right-handed alpha
Helix 55	AG1	N	185	224	Right-handed alpha
Helix 56	AG2	P	4	9	Right-handed alpha
Helix 57	AG3	P	9	19	Right-handed alpha
Helix 58	AG4	P	21	41	Right-handed alpha
Helix 59	AG5	Q	1	7	Right-handed 310
Helix 60	AG6	Q	8	22	Right-handed alpha
Helix 61	AG7	Q	22	30	Right-handed alpha
Helix 62	AG8	R	26	32	Right-handed alpha
Helix 63	AG9	R	35	55	Right-handed alpha
Helix 64	AH1	R	62	79	Right-handed alpha
Helix 65	AH2	R	80	85	Right-handed alpha
Helix 66	AH3	R	86	88	Right-handed 310
Helix 67	AH4	S	27	37	Right-handed alpha
Helix 68	AH5	S	44	62	Right-handed alpha
Helix 69	AH6	S	63	67	Right-handed 310
Helix 70	AH7	S	68	93	Right-handed alpha
Helix 71	AH8	T	8	45	Right-handed alpha

There are 5 sheets in PDB entry 8H9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	171	179	first strand
Strand 2	G	157	165	anti-parallel
Strand 3	G	66	71	parallel
Strand 4	G	103	108	parallel
Strand 5	G	126	129	parallel
Strand 6	I	44	46	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	47	first strand
Strand 2	H	26	40	anti-parallel
Strand 3	H	17	21	anti-parallel
Strand 4	H	89	94	parallel
Strand 5	H	80	84	anti-parallel
Strand 6	H	54	58	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	47	first strand
Strand 2	H	26	40	anti-parallel
Strand 3	H	61	67	anti-parallel
Strand 4	H	72	77	anti-parallel
Strand 5	H	97	99	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	13	first strand
Strand 2	K	17	18	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	13	14	first strand
Strand 2	N	17	18	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H9F