Analysis of interatomic Contacts of Structural Units in PDB entry:
8H9R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8H9R entry

There are 3 chains in PDB entry 8H9R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
K
 PRO 3ALA 208
L
 GLN 40PRO 106
M
 LEU 5LEU 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8H9R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
K
19 26Right-handed alpha
Helix 2
AA2
K
29 31Right-handed 310
Helix 3
AA3
K
32 48Right-handed alpha
Helix 4
AA4
K
54 121Right-handed alpha
Helix 5
AA5
K
122 182Right-handed alpha
Helix 6
AA6
K
194 206Right-handed alpha
Helix 7
AA7
L
41 55Right-handed alpha
Helix 8
AA8
L
67 83Right-handed alpha
Helix 9
AA9
M
12 18Right-handed alpha
Helix 10
AB1
M
19 22Right-handed 310
Helix 11
AB2
M
23 43Right-handed alpha
Helix 12
AB3
M
53 58Right-handed alpha
Helix 13
AB4
M
64 75Right-handed alpha
Helix 14
AB5
M
85 123Right-handed alpha
Helix 15
AB6
M
126 130Right-handed 310
Helix 16
AB7
M
131 139Right-handed alpha
Helix 17
AB8
M
140 143Right-handed 310
Helix 18
AB9
M
156 160Right-handed 310
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There is 1 sheet (AA1) in PDB entry 8H9R.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
12 13first strand
Strand 2
K
17 18anti-parallel
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