Analysis of interatomic Contacts of Structural Units in PDB entry:
8H9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8H9V entry

There are 27 chains in PDB entry 8H9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
4	ASP 1	MET 75
5	ASP 1	MET 75
6	ASP 1	MET 75
7	ASP 1	MET 75
8	ASP 1	MET 75
1	ASP 1	MET 75
2	ASP 1	MET 75
3	ASP 1	MET 75
H	GLN 15	GLU 146
I	VAL 2	VAL 46
K	PRO 3	ALA 208
M	LEU 5	LEU 160
N	ASN 4	THR 226
P	LEU 2	ASP 42
Q	MET 1	TRP 51
R	GLU 19	TYR 92
S	LEU 26	VAL 102
T	VAL 2	ALA 45
L	GLN 40	PRO 106
A	ASP 24	GLU 509
B	ASP 24	GLU 509
C	ASP 24	PHE 508
E	ALA 12	LYS 475
F	ALA 12	ALA 477
D	ALA 12	ALA 477
G	THR 2	LEU 272
O	ALA 2	GLU 188

There are198 helices in PDB entry 8H9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	4	1	17	Right-handed alpha
Helix 2	AA2	4	17	39	Right-handed alpha
Helix 3	AA3	4	42	73	Right-handed alpha
Helix 4	AA4	5	2	17	Right-handed alpha
Helix 5	AA5	5	17	39	Right-handed alpha
Helix 6	AA6	5	42	73	Right-handed alpha
Helix 7	AA7	6	2	17	Right-handed alpha
Helix 8	AA8	6	17	39	Right-handed alpha
Helix 9	AA9	6	42	73	Right-handed alpha
Helix 10	AB1	7	2	17	Right-handed alpha
Helix 11	AB2	7	17	39	Right-handed alpha
Helix 12	AB3	7	42	73	Right-handed alpha
Helix 13	AB4	8	2	17	Right-handed alpha
Helix 14	AB5	8	17	39	Right-handed alpha
Helix 15	AB6	8	42	73	Right-handed alpha
Helix 16	AB7	1	2	17	Right-handed alpha
Helix 17	AB8	1	17	39	Right-handed alpha
Helix 18	AB9	1	42	73	Right-handed alpha
Helix 19	AC1	2	2	17	Right-handed alpha
Helix 20	AC2	2	17	39	Right-handed alpha
Helix 21	AC3	2	42	73	Right-handed alpha
Helix 22	AC4	3	2	17	Right-handed alpha
Helix 23	AC5	3	17	39	Right-handed alpha
Helix 24	AC6	3	42	73	Right-handed alpha
Helix 25	AC7	H	101	103	Right-handed 310
Helix 26	AC8	H	104	122	Right-handed alpha
Helix 27	AC9	H	124	146	Right-handed alpha
Helix 28	AD1	I	3	9	Right-handed alpha
Helix 29	AD2	I	11	26	Right-handed alpha
Helix 30	AD3	I	28	38	Right-handed alpha
Helix 31	AD4	K	19	30	Right-handed alpha
Helix 32	AD5	K	32	48	Right-handed alpha
Helix 33	AD6	K	54	97	Right-handed alpha
Helix 34	AD7	K	98	120	Right-handed alpha
Helix 35	AD8	K	122	182	Right-handed alpha
Helix 36	AD9	K	194	206	Right-handed alpha
Helix 37	AE1	M	12	18	Right-handed alpha
Helix 38	AE2	M	19	22	Right-handed 310
Helix 39	AE3	M	23	43	Right-handed alpha
Helix 40	AE4	M	53	58	Right-handed alpha
Helix 41	AE5	M	64	75	Right-handed alpha
Helix 42	AE6	M	85	123	Right-handed alpha
Helix 43	AE7	M	126	130	Right-handed 310
Helix 44	AE8	M	131	139	Right-handed alpha
Helix 45	AE9	N	6	10	Right-handed 310
Helix 46	AF1	N	19	26	Right-handed alpha
Helix 47	AF2	N	27	31	Right-handed 310
Helix 48	AF3	N	40	59	Right-handed alpha
Helix 49	AF4	N	64	67	Right-handed 310
Helix 50	AF5	N	68	87	Right-handed alpha
Helix 51	AF6	N	93	96	Right-handed 310
Helix 52	AF7	N	97	119	Right-handed alpha
Helix 53	AF8	N	120	127	Right-handed alpha
Helix 54	AF9	N	134	136	Right-handed 310
Helix 55	AG1	N	137	181	Right-handed alpha
Helix 56	AG2	N	185	225	Right-handed alpha
Helix 57	AG3	P	4	9	Right-handed alpha
Helix 58	AG4	P	9	19	Right-handed alpha
Helix 59	AG5	P	21	41	Right-handed alpha
Helix 60	AG6	Q	1	8	Right-handed 310
Helix 61	AG7	Q	9	22	Right-handed alpha
Helix 62	AG8	Q	22	30	Right-handed alpha
Helix 63	AG9	R	26	32	Right-handed alpha
Helix 64	AH1	R	35	55	Right-handed alpha
Helix 65	AH2	R	62	85	Right-handed alpha
Helix 66	AH3	R	86	88	Right-handed 310
Helix 67	AH4	S	27	37	Right-handed alpha
Helix 68	AH5	S	44	61	Right-handed alpha
Helix 69	AH6	S	62	67	Right-handed 310
Helix 70	AH7	S	68	94	Right-handed alpha
Helix 71	AH8	T	8	45	Right-handed alpha
Helix 72	AH9	L	41	54	Right-handed alpha
Helix 73	AI1	L	67	83	Right-handed alpha
Helix 74	AI2	A	100	104	Right-handed 310
Helix 75	AI3	A	150	157	Right-handed alpha
Helix 76	AI4	A	174	186	Right-handed alpha
Helix 77	AI5	A	186	191	Right-handed alpha
Helix 78	AI6	A	209	222	Right-handed alpha
Helix 79	AI7	A	225	227	Right-handed 310
Helix 80	AI8	A	239	260	Right-handed alpha
Helix 81	AI9	A	270	285	Right-handed alpha
Helix 82	AJ1	A	290	294	Right-handed 310
Helix 83	AJ2	A	297	307	Right-handed alpha
Helix 84	AJ3	A	336	346	Right-handed alpha
Helix 85	AJ4	A	353	359	Right-handed alpha
Helix 86	AJ5	A	374	379	Right-handed 310
Helix 87	AJ6	A	380	399	Right-handed alpha
Helix 88	AJ7	A	400	404	Right-handed 310
Helix 89	AJ8	A	406	410	Right-handed 310
Helix 90	AJ9	A	411	429	Right-handed alpha
Helix 91	AK1	A	437	450	Right-handed alpha
Helix 92	AK2	A	457	459	Right-handed 310
Helix 93	AK3	A	460	476	Right-handed alpha
Helix 94	AK4	A	476	487	Right-handed alpha
Helix 95	AK5	A	490	508	Right-handed alpha
Helix 96	AK6	B	78	82	Right-handed 310
Helix 97	AK7	B	100	104	Right-handed 310
Helix 98	AK8	B	150	157	Right-handed alpha
Helix 99	AK9	B	174	186	Right-handed alpha
Helix 100	AL1	B	187	189	Right-handed 310
Helix 101	AL2	B	209	223	Right-handed alpha
Helix 102	AL3	B	239	259	Right-handed alpha
Helix 103	AL4	B	270	284	Right-handed alpha
Helix 104	AL5	B	290	294	Right-handed 310
Helix 105	AL6	B	297	307	Right-handed alpha
Helix 106	AL7	B	313	317	Right-handed 310
Helix 107	AL8	B	336	346	Right-handed alpha
Helix 108	AL9	B	354	359	Right-handed alpha
Helix 109	AM1	B	380	401	Right-handed alpha
Helix 110	AM2	B	412	429	Right-handed alpha
Helix 111	AM3	B	437	450	Right-handed alpha
Helix 112	AM4	B	457	476	Right-handed alpha
Helix 113	AM5	B	476	487	Right-handed alpha
Helix 114	AM6	B	490	507	Right-handed alpha
Helix 115	AM7	C	78	82	Right-handed 310
Helix 116	AM8	C	100	104	Right-handed 310
Helix 117	AM9	C	150	157	Right-handed alpha
Helix 118	AN1	C	174	186	Right-handed alpha
Helix 119	AN2	C	186	191	Right-handed alpha
Helix 120	AN3	C	209	223	Right-handed alpha
Helix 121	AN4	C	239	260	Right-handed alpha
Helix 122	AN5	C	270	285	Right-handed alpha
Helix 123	AN6	C	290	294	Right-handed 310
Helix 124	AN7	C	297	307	Right-handed alpha
Helix 125	AN8	C	336	346	Right-handed alpha
Helix 126	AN9	C	354	359	Right-handed alpha
Helix 127	AO1	C	374	379	Right-handed 310
Helix 128	AO2	C	380	401	Right-handed alpha
Helix 129	AO3	C	418	429	Right-handed alpha
Helix 130	AO4	C	437	450	Right-handed alpha
Helix 131	AO5	C	460	476	Right-handed alpha
Helix 132	AO6	C	476	487	Right-handed alpha
Helix 133	AO7	C	490	507	Right-handed alpha
Helix 134	AO8	E	90	94	Right-handed 310
Helix 135	AO9	E	125	129	Right-handed 310
Helix 136	AP1	E	140	147	Right-handed alpha
Helix 137	AP2	E	164	180	Right-handed alpha
Helix 138	AP3	E	192	206	Right-handed alpha
Helix 139	AP4	E	228	249	Right-handed alpha
Helix 140	AP5	E	261	275	Right-handed alpha
Helix 141	AP6	E	287	297	Right-handed alpha
Helix 142	AP7	E	315	319	Right-handed 310
Helix 143	AP8	E	322	330	Right-handed alpha
Helix 144	AP9	E	340	345	Right-handed alpha
Helix 145	AQ1	E	362	391	Right-handed alpha
Helix 146	AQ2	E	402	418	Right-handed alpha
Helix 147	AQ3	E	421	423	Right-handed 310
Helix 148	AQ4	E	424	429	Right-handed alpha
Helix 149	AQ5	E	436	449	Right-handed alpha
Helix 150	AQ6	E	456	461	Right-handed 310
Helix 151	AQ7	E	465	475	Right-handed alpha
Helix 152	AQ8	F	90	94	Right-handed 310
Helix 153	AQ9	F	140	147	Right-handed alpha
Helix 154	AR1	F	164	176	Right-handed alpha
Helix 155	AR2	F	192	206	Right-handed alpha
Helix 156	AR3	F	228	249	Right-handed alpha
Helix 157	AR4	F	261	273	Right-handed alpha
Helix 158	AR5	F	287	297	Right-handed alpha
Helix 159	AR6	F	316	319	Right-handed 310
Helix 160	AR7	F	322	329	Right-handed alpha
Helix 161	AR8	F	330	332	Right-handed 310
Helix 162	AR9	F	339	344	Right-handed alpha
Helix 163	AS1	F	362	394	Right-handed alpha
Helix 164	AS2	F	400	418	Right-handed alpha
Helix 165	AS3	F	436	449	Right-handed alpha
Helix 166	AS4	F	456	460	Right-handed 310
Helix 167	AS5	F	465	476	Right-handed alpha
Helix 168	AS6	D	90	94	Right-handed 310
Helix 169	AS7	D	125	129	Right-handed 310
Helix 170	AS8	D	165	179	Right-handed alpha
Helix 171	AS9	D	192	205	Right-handed alpha
Helix 172	AT1	D	228	251	Right-handed alpha
Helix 173	AT2	D	260	276	Right-handed alpha
Helix 174	AT3	D	292	297	Right-handed alpha
Helix 175	AT4	D	339	345	Right-handed alpha
Helix 176	AT5	D	367	388	Right-handed alpha
Helix 177	AT6	D	404	417	Right-handed alpha
Helix 178	AT7	D	421	425	Right-handed 310
Helix 179	AT8	D	436	448	Right-handed alpha
Helix 180	AT9	D	456	460	Right-handed 310
Helix 181	AU1	D	465	475	Right-handed alpha
Helix 182	AU2	G	3	32	Right-handed alpha
Helix 183	AU3	G	37	56	Right-handed alpha
Helix 184	AU4	G	80	99	Right-handed alpha
Helix 185	AU5	G	109	118	Right-handed alpha
Helix 186	AU6	G	137	150	Right-handed alpha
Helix 187	AU7	G	180	187	Right-handed alpha
Helix 188	AU8	G	188	193	Right-handed 310
Helix 189	AU9	G	197	270	Right-handed alpha
Helix 190	AV1	O	12	28	Right-handed alpha
Helix 191	AV2	O	31	46	Right-handed alpha
Helix 192	AV3	O	48	55	Right-handed alpha
Helix 193	AV4	O	61	75	Right-handed alpha
Helix 194	AV5	O	79	91	Right-handed alpha
Helix 195	AV6	O	97	113	Right-handed alpha
Helix 196	AV7	O	127	141	Right-handed alpha
Helix 197	AV8	O	155	159	Right-handed 310
Helix 198	AV9	O	174	187	Right-handed alpha

There are 28 sheets in PDB entry 8H9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	26	first strand
Strand 2	H	17	22	anti-parallel
Strand 3	H	31	40	anti-parallel
Strand 4	H	89	94	first strand
Strand 5	H	80	84	anti-parallel
Strand 6	H	54	57	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	48	first strand
Strand 2	H	31	40	anti-parallel
Strand 3	H	17	22	anti-parallel
Strand 4	H	61	67	first strand
Strand 5	H	72	77	anti-parallel
Strand 6	H	97	99	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	46	first strand
Strand 2	G	126	129	anti-parallel
Strand 3	G	103	108	parallel
Strand 4	G	66	71	parallel
Strand 5	G	157	165	parallel
Strand 6	G	171	179	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	12	13	first strand
Strand 2	K	17	18	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	O	169	172	anti-parallel
Strand 3	O	162	166	anti-parallel
Strand 4	O	115	122	anti-parallel
Strand 5	O	147	150	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	71	75	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	E	13	20	anti-parallel
Strand 6	A	51	54	first strand

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	33	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	71	75	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	E	77	80	first strand
Strand 6	E	38	41	anti-parallel
Strand 7	E	49	57	anti-parallel
Strand 8	E	60	65	anti-parallel
Strand 9	E	23	28	anti-parallel
Strand 10	E	13	20	anti-parallel
Strand 11	A	51	54	first strand

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	125	128	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	229	234	parallel
Strand 3	A	200	206	parallel
Strand 4	A	263	269	parallel
Strand 5	A	320	323	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	166	169	parallel
Strand 3	A	348	351	parallel
Strand 4	A	371	372	anti-parallel

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There are 14 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	66	first strand
Strand 2	B	51	55	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	28	35	anti-parallel
Strand 5	B	38	43	anti-parallel
Strand 6	B	70	75	anti-parallel
Strand 7	B	60	66	anti-parallel
Strand 8	F	13	20	anti-parallel
Strand 9	F	77	80	anti-parallel
Strand 10	F	38	41	anti-parallel
Strand 11	F	49	57	anti-parallel
Strand 12	F	60	65	anti-parallel
Strand 13	F	23	28	anti-parallel
Strand 14	F	13	20	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	229	234	parallel
Strand 3	B	200	206	parallel
Strand 4	B	263	269	parallel
Strand 5	B	320	323	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	328	first strand
Strand 2	B	166	169	parallel
Strand 3	B	348	352	parallel
Strand 4	B	371	372	anti-parallel

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There are 14 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	66	first strand
Strand 2	C	51	55	anti-parallel
Strand 3	C	87	89	anti-parallel
Strand 4	C	28	35	anti-parallel
Strand 5	C	38	43	anti-parallel
Strand 6	C	71	75	anti-parallel
Strand 7	C	60	66	anti-parallel
Strand 8	D	13	20	anti-parallel
Strand 9	D	77	79	anti-parallel
Strand 10	D	38	41	anti-parallel
Strand 11	D	49	55	anti-parallel
Strand 12	D	60	65	anti-parallel
Strand 13	D	23	27	anti-parallel
Strand 14	D	13	20	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	125	128	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	229	234	parallel
Strand 3	C	199	206	parallel
Strand 4	C	263	269	parallel
Strand 5	C	320	323	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	328	first strand
Strand 2	C	167	169	parallel
Strand 3	C	351	352	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	E	115	118	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	98	first strand
Strand 2	E	218	224	parallel
Strand 3	E	184	191	parallel
Strand 4	E	253	258	parallel
Strand 5	E	306	312	parallel
Strand 6	E	154	157	parallel
Strand 7	E	332	336	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	136	first strand
Strand 2	E	149	150	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	89	first strand
Strand 2	F	115	118	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	98	first strand
Strand 2	F	219	223	parallel
Strand 3	F	184	189	parallel
Strand 4	F	253	259	parallel
Strand 5	F	306	314	parallel
Strand 6	F	154	159	parallel
Strand 7	F	334	337	parallel
Strand 8	F	357	358	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	136	first strand
Strand 2	F	149	150	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	89	first strand
Strand 2	D	115	118	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	98	first strand
Strand 2	D	218	224	parallel
Strand 3	D	184	191	parallel
Strand 4	D	253	258	parallel
Strand 5	D	306	311	parallel
Strand 6	D	154	156	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	136	first strand
Strand 2	D	149	150	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	335	first strand
Strand 2	D	357	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8H9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8H9V