Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HAD entry

There are 2 chains in PDB entry 8HAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5VAL 345
B
 LEU 4VAL 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8HAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 17Right-handed alpha
Helix 2
AA2
A
32 48Right-handed alpha
Helix 3
AA3
A
60 67Right-handed alpha
Helix 4
AA4
A
105 118Right-handed alpha
Helix 5
AA5
A
120 138Right-handed alpha
Helix 6
AA6
A
148 157Right-handed alpha
Helix 7
AA7
A
157 185Right-handed alpha
Helix 8
AA8
A
192 219Right-handed alpha
Helix 9
AA9
A
233 250Right-handed alpha
Helix 10
AB1
A
270 279Right-handed alpha
Helix 11
AB2
A
284 312Right-handed alpha
Helix 12
AB3
A
330 343Right-handed alpha
Helix 13
AB4
B
11 17Right-handed alpha
Helix 14
AB5
B
32 48Right-handed alpha
Helix 15
AB6
B
60 67Right-handed alpha
Helix 16
AB7
B
106 118Right-handed alpha
Helix 17
AB8
B
120 138Right-handed alpha
Helix 18
AB9
B
148 176Right-handed alpha
Helix 19
AC1
B
176 185Right-handed alpha
Helix 20
AC2
B
192 219Right-handed alpha
Helix 21
AC3
B
233 250Right-handed alpha
Helix 22
AC4
B
268 279Right-handed alpha
Helix 23
AC5
B
284 312Right-handed alpha
Helix 24
AC6
B
330 343Right-handed alpha
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There are 2 sheets in PDB entry 8HAD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 76first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
51 55parallel
Strand 4
A
141 145parallel
Strand 5
A
22 27parallel
Strand 6
A
224 230parallel
Strand 7
A
254 262parallel
Strand 8
A
317 322parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
83 87anti-parallel
Strand 3
B
51 55parallel
Strand 4
B
141 145parallel
Strand 5
B
22 27parallel
Strand 6
B
224 230parallel
Strand 7
B
254 262parallel
Strand 8
B
317 322parallel
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