Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HAE entry

There are 2 chains in PDB entry 8HAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1CYS 901
B
 MET 1CYS 901
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are102 helices in PDB entry 8HAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 4Right-handed 310
Helix 2
AA2
A
5 15Right-handed alpha
Helix 3
AA3
A
26 40Right-handed alpha
Helix 4
AA4
A
67 76Right-handed alpha
Helix 5
AA5
A
77 88Right-handed alpha
Helix 6
AA6
A
100 109Right-handed alpha
Helix 7
AA7
A
110 118Right-handed alpha
Helix 8
AA8
A
133 142Right-handed alpha
Helix 9
AA9
A
143 149Right-handed alpha
Helix 10
AB1
A
150 154Right-handed 310
Helix 11
AB2
A
166 175Right-handed alpha
Helix 12
AB3
A
177 187Right-handed alpha
Helix 13
AB4
A
199 208Right-handed alpha
Helix 14
AB5
A
209 220Right-handed alpha
Helix 15
AB6
A
232 239Right-handed alpha
Helix 16
AB7
A
242 252Right-handed alpha
Helix 17
AB8
A
255 265Right-handed alpha
Helix 18
AB9
A
269 282Right-handed alpha
Helix 19
AC1
A
284 308Right-handed alpha
Helix 20
AC2
A
314 334Right-handed alpha
Helix 21
AC3
A
352 381Right-handed alpha
Helix 22
AC4
A
443 462Right-handed alpha
Helix 23
AC5
A
473 492Right-handed alpha
Helix 24
AC6
A
502 508Right-handed alpha
Helix 25
AC7
A
508 522Right-handed alpha
Helix 26
AC8
A
523 526Right-handed 310
Helix 27
AC9
A
527 532Right-handed alpha
Helix 28
AD1
A
532 537Right-handed alpha
Helix 29
AD2
A
541 546Right-handed alpha
Helix 30
AD3
A
558 560Right-handed 310
Helix 31
AD4
A
561 571Right-handed alpha
Helix 32
AD5
A
574 579Right-handed alpha
Helix 33
AD6
A
593 608Right-handed alpha
Helix 34
AD7
A
629 635Right-handed 310
Helix 35
AD8
A
636 654Right-handed alpha
Helix 36
AD9
A
663 672Right-handed alpha
Helix 37
AE1
A
677 683Right-handed 310
Helix 38
AE2
A
684 697Right-handed alpha
Helix 39
AE3
A
698 703Right-handed alpha
Helix 40
AE4
A
726 730Right-handed 310
Helix 41
AE5
A
733 735Right-handed 310
Helix 42
AE6
A
736 750Right-handed alpha
Helix 43
AE7
A
752 765Right-handed alpha
Helix 44
AE8
A
771 776Right-handed 310
Helix 45
AE9
A
777 782Right-handed alpha
Helix 46
AF1
A
782 787Right-handed alpha
Helix 47
AF2
A
792 799Right-handed alpha
Helix 48
AF3
A
810 821Right-handed alpha
Helix 49
AF4
A
824 837Right-handed alpha
Helix 50
AF5
A
845 849Right-handed 310
Helix 51
AF6
A
887 901Right-handed alpha
Helix 52
AF7
B
1 4Right-handed 310
Helix 53
AF8
B
5 15Right-handed alpha
Helix 54
AF9
B
26 40Right-handed alpha
Helix 55
AG1
B
67 76Right-handed alpha
Helix 56
AG2
B
77 88Right-handed alpha
Helix 57
AG3
B
100 109Right-handed alpha
Helix 58
AG4
B
110 118Right-handed alpha
Helix 59
AG5
B
133 142Right-handed alpha
Helix 60
AG6
B
143 149Right-handed alpha
Helix 61
AG7
B
150 154Right-handed 310
Helix 62
AG8
B
166 175Right-handed alpha
Helix 63
AG9
B
177 187Right-handed alpha
Helix 64
AH1
B
199 208Right-handed alpha
Helix 65
AH2
B
209 220Right-handed alpha
Helix 66
AH3
B
232 239Right-handed alpha
Helix 67
AH4
B
242 252Right-handed alpha
Helix 68
AH5
B
255 265Right-handed alpha
Helix 69
AH6
B
269 282Right-handed alpha
Helix 70
AH7
B
284 308Right-handed alpha
Helix 71
AH8
B
314 334Right-handed alpha
Helix 72
AH9
B
352 381Right-handed alpha
Helix 73
AI1
B
443 462Right-handed alpha
Helix 74
AI2
B
473 492Right-handed alpha
Helix 75
AI3
B
502 508Right-handed alpha
Helix 76
AI4
B
508 522Right-handed alpha
Helix 77
AI5
B
523 526Right-handed 310
Helix 78
AI6
B
527 532Right-handed alpha
Helix 79
AI7
B
532 537Right-handed alpha
Helix 80
AI8
B
541 546Right-handed alpha
Helix 81
AI9
B
558 560Right-handed 310
Helix 82
AJ1
B
561 571Right-handed alpha
Helix 83
AJ2
B
574 579Right-handed alpha
Helix 84
AJ3
B
593 608Right-handed alpha
Helix 85
AJ4
B
629 635Right-handed 310
Helix 86
AJ5
B
636 654Right-handed alpha
Helix 87
AJ6
B
663 672Right-handed alpha
Helix 88
AJ7
B
677 683Right-handed 310
Helix 89
AJ8
B
684 697Right-handed alpha
Helix 90
AJ9
B
698 703Right-handed alpha
Helix 91
AK1
B
726 730Right-handed 310
Helix 92
AK2
B
733 735Right-handed 310
Helix 93
AK3
B
736 750Right-handed alpha
Helix 94
AK4
B
752 765Right-handed alpha
Helix 95
AK5
B
771 776Right-handed 310
Helix 96
AK6
B
777 782Right-handed alpha
Helix 97
AK7
B
782 787Right-handed alpha
Helix 98
AK8
B
792 799Right-handed alpha
Helix 99
AK9
B
810 821Right-handed alpha
Helix 100
AL1
B
824 837Right-handed alpha
Helix 101
AL2
B
845 849Right-handed 310
Helix 102
AL3
B
887 901Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8HAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 337first strand
Strand 2
A
340 342anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 557first strand
Strand 2
A
583 586parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 617first strand
Strand 2
A
626 627anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 713first strand
Strand 2
A
718 722anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
801 803first strand
Strand 2
A
859 863parallel
Strand 3
A
879 883parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 337first strand
Strand 2
B
340 342anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
554 557first strand
Strand 2
B
583 586parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
616 617first strand
Strand 2
B
626 627anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
709 713first strand
Strand 2
B
718 722anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
801 803first strand
Strand 2
B
859 863parallel
Strand 3
B
879 883parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il