Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HAH entry

There are 11 chains in PDB entry 8HAH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 33	ALA 135
B	ARG 23	GLY 102
C	ALA 12	LYS 118
D	LYS 28	ALA 124
E	LYS 37	ALA 135
F	LYS 20	GLY 102
G	ALA 14	LYS 118
H	ARG 29	ALA 124
I	A 12	A 175
J	T 6	T 169
K	LEU 1054	ASP 1664

There are 54 helices in PDB entry 8HAH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	56	Right-handed alpha
Helix 2	AA2	A	63	79	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	B	30	40	Right-handed alpha
Helix 6	AA6	B	50	76	Right-handed alpha
Helix 7	AA7	B	82	91	Right-handed alpha
Helix 8	AA8	B	92	94	Right-handed 310
Helix 9	AA9	C	16	21	Right-handed alpha
Helix 10	AB1	C	27	37	Right-handed alpha
Helix 11	AB2	C	45	72	Right-handed alpha
Helix 12	AB3	C	79	89	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	D	37	49	Right-handed alpha
Helix 15	AB6	D	55	85	Right-handed alpha
Helix 16	AB7	D	90	102	Right-handed alpha
Helix 17	AB8	D	104	124	Right-handed alpha
Helix 18	AB9	E	45	55	Right-handed alpha
Helix 19	AC1	E	63	76	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	131	Right-handed alpha
Helix 22	AC4	F	25	29	Right-handed 310
Helix 23	AC5	F	30	41	Right-handed alpha
Helix 24	AC6	F	50	76	Right-handed alpha
Helix 25	AC7	F	82	93	Right-handed alpha
Helix 26	AC8	G	16	22	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	46	72	Right-handed alpha
Helix 29	AD2	G	79	89	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	37	49	Right-handed alpha
Helix 32	AD5	H	57	83	Right-handed alpha
Helix 33	AD6	H	90	102	Right-handed alpha
Helix 34	AD7	H	103	124	Right-handed alpha
Helix 35	AD8	K	1055	1068	Right-handed alpha
Helix 36	AD9	K	1072	1077	Right-handed alpha
Helix 37	AE1	K	1080	1084	Right-handed 310
Helix 38	AE2	K	1088	1093	Right-handed alpha
Helix 39	AE3	K	1098	1108	Right-handed alpha
Helix 40	AE4	K	1113	1132	Right-handed alpha
Helix 41	AE5	K	1136	1161	Right-handed alpha
Helix 42	AE6	K	1256	1260	Right-handed alpha
Helix 43	AE7	K	1272	1279	Right-handed alpha
Helix 44	AE8	K	1289	1293	Right-handed 310
Helix 45	AE9	K	1296	1314	Right-handed alpha
Helix 46	AF1	K	1336	1343	Right-handed alpha
Helix 47	AF2	K	1409	1429	Right-handed alpha
Helix 48	AF3	K	1459	1477	Right-handed alpha
Helix 49	AF4	K	1486	1494	Right-handed alpha
Helix 50	AF5	K	1497	1501	Right-handed 310
Helix 51	AF6	K	1507	1517	Right-handed alpha
Helix 52	AF7	K	1579	1591	Right-handed alpha
Helix 53	AF8	K	1626	1637	Right-handed alpha
Helix 54	AF9	K	1643	1663	Right-handed alpha

There are 8 sheets in PDB entry 8HAH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1175	1176	first strand
Strand 2	K	1184	1185	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1198	1201	first strand
Strand 2	K	1190	1194	anti-parallel
Strand 3	K	1233	1235	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1244	1246	first strand
Strand 2	K	1253	1255	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1320	1334	first strand
Strand 2	K	1352	1366	anti-parallel
Strand 3	K	1369	1381	anti-parallel
Strand 4	K	1392	1400	anti-parallel
Strand 5	K	1432	1436	parallel
Strand 6	K	1595	1599	anti-parallel
Strand 7	K	1482	1485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HAH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAH