Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HAJ entry

There are 13 chains in PDB entry 8HAJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 36	ARG 134
B	GLY 11	GLY 11
B	GLY 13	ALA 15
B	ARG 17	GLY 102
C	ALA 14	LYS 119
D	ARG 28	ALA 121
E	PRO 38	ALA 135
F	ARG 19	GLY 102
G	ALA 14	LYS 118
H	ARG 28	ALA 121
I	T 10	G 173
J	C 8	T 169
K	LYS 1050	ASP 1664

There are 52 helices in PDB entry 8HAJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	56	Right-handed alpha
Helix 2	AA2	A	63	79	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	16	21	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	101	120	Right-handed alpha
Helix 18	AB9	E	44	57	Right-handed alpha
Helix 19	AC1	E	63	79	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	121	131	Right-handed alpha
Helix 22	AC4	F	25	29	Right-handed 310
Helix 23	AC5	F	30	41	Right-handed alpha
Helix 24	AC6	F	49	76	Right-handed alpha
Helix 25	AC7	F	82	93	Right-handed alpha
Helix 26	AC8	G	16	21	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	45	73	Right-handed alpha
Helix 29	AD2	G	79	90	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	34	46	Right-handed alpha
Helix 32	AD5	H	52	81	Right-handed alpha
Helix 33	AD6	H	87	99	Right-handed alpha
Helix 34	AD7	H	100	121	Right-handed alpha
Helix 35	AD8	K	1051	1068	Right-handed alpha
Helix 36	AD9	K	1072	1077	Right-handed alpha
Helix 37	AE1	K	1088	1093	Right-handed alpha
Helix 38	AE2	K	1098	1109	Right-handed alpha
Helix 39	AE3	K	1113	1132	Right-handed alpha
Helix 40	AE4	K	1136	1159	Right-handed alpha
Helix 41	AE5	K	1201	1208	Right-handed alpha
Helix 42	AE6	K	1272	1279	Right-handed alpha
Helix 43	AE7	K	1296	1314	Right-handed alpha
Helix 44	AE8	K	1336	1343	Right-handed alpha
Helix 45	AE9	K	1406	1429	Right-handed alpha
Helix 46	AF1	K	1459	1477	Right-handed alpha
Helix 47	AF2	K	1486	1493	Right-handed alpha
Helix 48	AF3	K	1497	1501	Right-handed 310
Helix 49	AF4	K	1507	1519	Right-handed alpha
Helix 50	AF5	K	1579	1591	Right-handed alpha
Helix 51	AF6	K	1626	1638	Right-handed alpha
Helix 52	AF7	K	1643	1664	Right-handed alpha

There are 14 sheets in PDB entry 8HAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	G	100	101	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	F	96	97	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1175	1176	first strand
Strand 2	K	1184	1185	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1192	1194	first strand
Strand 2	K	1198	1200	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1244	1246	first strand
Strand 2	K	1253	1255	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1321	1334	first strand
Strand 2	K	1352	1366	anti-parallel
Strand 3	K	1369	1381	anti-parallel
Strand 4	K	1392	1397	anti-parallel
Strand 5	K	1432	1436	parallel
Strand 6	K	1595	1599	anti-parallel
Strand 7	K	1482	1485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HAJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAJ