Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HAK entry

There are 13 chains in PDB entry 8HAK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 39	ARG 134
B	VAL 21	GLY 101
C	ALA 14	LYS 118
D	ARG 31	ALA 124
E	PRO 38	ARG 134
F	GLY 11	GLY 11
F	GLY 13	ALA 15
F	ARG 17	GLY 101
G	LYS 13	LYS 118
H	LYS 30	ALA 124
J	T 19	G 165
K	A 18	A 162
N	PRO 1051	ASP 1664

There are 54 helices in PDB entry 8HAK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	56	Right-handed alpha
Helix 2	AA2	A	63	77	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed alpha
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	16	21	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	C	112	116	Right-handed 310
Helix 15	AB6	D	37	49	Right-handed alpha
Helix 16	AB7	D	55	84	Right-handed alpha
Helix 17	AB8	D	90	102	Right-handed alpha
Helix 18	AB9	D	104	122	Right-handed alpha
Helix 19	AC1	E	44	57	Right-handed alpha
Helix 20	AC2	E	63	79	Right-handed alpha
Helix 21	AC3	E	85	114	Right-handed alpha
Helix 22	AC4	E	120	132	Right-handed alpha
Helix 23	AC5	F	25	29	Right-handed 310
Helix 24	AC6	F	30	41	Right-handed alpha
Helix 25	AC7	F	49	76	Right-handed alpha
Helix 26	AC8	F	83	93	Right-handed alpha
Helix 27	AC9	G	16	21	Right-handed alpha
Helix 28	AD1	G	26	36	Right-handed alpha
Helix 29	AD2	G	45	73	Right-handed alpha
Helix 30	AD3	G	79	90	Right-handed alpha
Helix 31	AD4	G	90	97	Right-handed alpha
Helix 32	AD5	H	37	49	Right-handed alpha
Helix 33	AD6	H	55	84	Right-handed alpha
Helix 34	AD7	H	90	102	Right-handed alpha
Helix 35	AD8	H	103	123	Right-handed alpha
Helix 36	AD9	N	1052	1068	Right-handed alpha
Helix 37	AE1	N	1072	1076	Right-handed 310
Helix 38	AE2	N	1080	1085	Right-handed alpha
Helix 39	AE3	N	1098	1109	Right-handed alpha
Helix 40	AE4	N	1113	1131	Right-handed alpha
Helix 41	AE5	N	1136	1160	Right-handed alpha
Helix 42	AE6	N	1256	1260	Right-handed alpha
Helix 43	AE7	N	1272	1280	Right-handed alpha
Helix 44	AE8	N	1289	1293	Right-handed 310
Helix 45	AE9	N	1296	1314	Right-handed alpha
Helix 46	AF1	N	1336	1343	Right-handed alpha
Helix 47	AF2	N	1406	1429	Right-handed alpha
Helix 48	AF3	N	1459	1477	Right-handed alpha
Helix 49	AF4	N	1486	1494	Right-handed alpha
Helix 50	AF5	N	1497	1501	Right-handed 310
Helix 51	AF6	N	1507	1519	Right-handed alpha
Helix 52	AF7	N	1580	1591	Right-handed alpha
Helix 53	AF8	N	1626	1638	Right-handed alpha
Helix 54	AF9	N	1643	1662	Right-handed alpha

There are 13 sheets in PDB entry 8HAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	G	100	101	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	F	96	97	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1198	1200	first strand
Strand 2	N	1190	1194	anti-parallel
Strand 3	N	1233	1235	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1244	1246	first strand
Strand 2	N	1253	1255	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1321	1334	first strand
Strand 2	N	1352	1366	anti-parallel
Strand 3	N	1369	1381	anti-parallel
Strand 4	N	1392	1400	anti-parallel
Strand 5	N	1432	1436	parallel
Strand 6	N	1595	1599	anti-parallel
Strand 7	N	1482	1485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HAK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAK