Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HAM entry

There are 12 chains in PDB entry 8HAM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 36	ARG 134
B	GLY 13	ALA 15
B	ARG 17	GLY 102
C	ALA 14	LYS 119
D	ARG 31	ALA 124
E	PRO 38	ALA 135
F	ARG 19	GLY 102
G	ALA 14	LYS 118
H	ARG 31	ALA 124
I	T 10	G 174
J	C 7	A 171
K	PRO 1087	GLN 1698

There are 53 helices in PDB entry 8HAM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	56	Right-handed alpha
Helix 2	AA2	A	63	79	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	16	21	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	D	37	49	Right-handed alpha
Helix 15	AB6	D	55	84	Right-handed alpha
Helix 16	AB7	D	90	102	Right-handed alpha
Helix 17	AB8	D	103	123	Right-handed alpha
Helix 18	AB9	E	44	57	Right-handed alpha
Helix 19	AC1	E	63	79	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	131	Right-handed alpha
Helix 22	AC4	F	25	29	Right-handed 310
Helix 23	AC5	F	30	42	Right-handed alpha
Helix 24	AC6	F	49	76	Right-handed alpha
Helix 25	AC7	F	82	94	Right-handed alpha
Helix 26	AC8	G	16	21	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	45	73	Right-handed alpha
Helix 29	AD2	G	79	90	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	37	49	Right-handed alpha
Helix 32	AD5	H	55	84	Right-handed alpha
Helix 33	AD6	H	90	102	Right-handed alpha
Helix 34	AD7	H	103	124	Right-handed alpha
Helix 35	AD8	K	1088	1104	Right-handed alpha
Helix 36	AD9	K	1108	1112	Right-handed 310
Helix 37	AE1	K	1124	1129	Right-handed alpha
Helix 38	AE2	K	1134	1145	Right-handed alpha
Helix 39	AE3	K	1149	1168	Right-handed alpha
Helix 40	AE4	K	1172	1197	Right-handed alpha
Helix 41	AE5	K	1238	1244	Right-handed alpha
Helix 42	AE6	K	1292	1296	Right-handed alpha
Helix 43	AE7	K	1308	1316	Right-handed alpha
Helix 44	AE8	K	1332	1350	Right-handed alpha
Helix 45	AE9	K	1372	1380	Right-handed alpha
Helix 46	AF1	K	1443	1464	Right-handed alpha
Helix 47	AF2	K	1495	1513	Right-handed alpha
Helix 48	AF3	K	1522	1530	Right-handed alpha
Helix 49	AF4	K	1533	1537	Right-handed 310
Helix 50	AF5	K	1543	1554	Right-handed alpha
Helix 51	AF6	K	1617	1629	Right-handed alpha
Helix 52	AF7	K	1664	1675	Right-handed alpha
Helix 53	AF8	K	1680	1698	Right-handed alpha

There are 14 sheets in PDB entry 8HAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	G	100	101	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1205	1206	first strand
Strand 2	K	1276	1277	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1234	1237	first strand
Strand 2	K	1226	1230	anti-parallel
Strand 3	K	1268	1271	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1280	1282	first strand
Strand 2	K	1289	1291	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1357	1370	first strand
Strand 2	K	1388	1402	anti-parallel
Strand 3	K	1405	1417	anti-parallel
Strand 4	K	1428	1436	anti-parallel
Strand 5	K	1468	1472	parallel
Strand 6	K	1632	1636	anti-parallel
Strand 7	K	1518	1521	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HAM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAM