Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HAO entry

There are 12 chains in PDB entry 8HAO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	LEU 361
B	GLU 3	SER 343
C	LEU 5	LEU 361
D	GLU 3	SER 343
E	THR 6	ARG 62
F	GLN 1	HIS 129
G	THR 6	ARG 62
H	SER 1	PHE 34
I	VAL 31	LEU 481
N	GLN 1	HIS 129
P	SER 1	PHE 34
R	VAL 31	LEU 481

There are 54 helices in PDB entry 8HAO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	33	Right-handed alpha
Helix 2	AA2	A	45	54	Right-handed alpha
Helix 3	AA3	A	212	216	Right-handed 310
Helix 4	AA4	A	232	246	Right-handed alpha
Helix 5	AA5	A	260	271	Right-handed alpha
Helix 6	AA6	A	274	279	Right-handed alpha
Helix 7	AA7	A	280	283	Right-handed 310
Helix 8	AA8	A	298	320	Right-handed alpha
Helix 9	AA9	A	337	358	Right-handed alpha
Helix 10	AB1	B	4	25	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	C	6	33	Right-handed alpha
Helix 13	AB4	C	45	54	Right-handed alpha
Helix 14	AB5	C	212	216	Right-handed 310
Helix 15	AB6	C	232	246	Right-handed alpha
Helix 16	AB7	C	260	271	Right-handed alpha
Helix 17	AB8	C	274	279	Right-handed alpha
Helix 18	AB9	C	280	285	Right-handed 310
Helix 19	AC1	C	298	320	Right-handed alpha
Helix 20	AC2	C	337	358	Right-handed alpha
Helix 21	AC3	D	4	25	Right-handed alpha
Helix 22	AC4	D	29	34	Right-handed alpha
Helix 23	AC5	E	7	24	Right-handed alpha
Helix 24	AC6	E	29	44	Right-handed alpha
Helix 25	AC7	E	45	48	Right-handed 310
Helix 26	AC8	F	87	91	Right-handed 310
Helix 27	AC9	G	7	24	Right-handed alpha
Helix 28	AD1	G	29	44	Right-handed alpha
Helix 29	AD2	G	45	48	Right-handed 310
Helix 30	AD3	H	2	33	Right-handed alpha
Helix 31	AD4	I	33	51	Right-handed alpha
Helix 32	AD5	I	178	212	Right-handed alpha
Helix 33	AD6	I	217	246	Right-handed alpha
Helix 34	AD7	I	278	312	Right-handed alpha
Helix 35	AD8	I	316	347	Right-handed alpha
Helix 36	AD9	I	357	359	Right-handed 310
Helix 37	AE1	I	360	392	Right-handed alpha
Helix 38	AE2	I	400	418	Right-handed alpha
Helix 39	AE3	I	419	425	Right-handed 310
Helix 40	AE4	I	434	460	Right-handed alpha
Helix 41	AE5	I	463	481	Right-handed alpha
Helix 42	AE6	N	87	91	Right-handed 310
Helix 43	AE7	P	2	33	Right-handed alpha
Helix 44	AE8	R	33	51	Right-handed alpha
Helix 45	AE9	R	179	212	Right-handed alpha
Helix 46	AF1	R	217	246	Right-handed alpha
Helix 47	AF2	R	278	312	Right-handed alpha
Helix 48	AF3	R	316	347	Right-handed alpha
Helix 49	AF4	R	357	359	Right-handed 310
Helix 50	AF5	R	360	392	Right-handed alpha
Helix 51	AF6	R	400	418	Right-handed alpha
Helix 52	AF7	R	419	423	Right-handed 310
Helix 53	AF8	R	434	460	Right-handed alpha
Helix 54	AF9	R	463	481	Right-handed alpha

There are 21 sheets in PDB entry 8HAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	191	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	253	259	parallel
Strand 6	A	326	330	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	52	first strand
Strand 2	B	335	341	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	259	265	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	194	201	anti-parallel
Strand 3	C	34	39	parallel
Strand 4	C	220	226	parallel
Strand 5	C	253	259	parallel
Strand 6	C	326	330	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	52	first strand
Strand 2	D	335	341	anti-parallel
Strand 3	D	327	331	anti-parallel
Strand 4	D	315	320	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	63	first strand
Strand 2	D	69	74	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	89	94	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	105	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	121	125	anti-parallel
Strand 4	D	135	139	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	151	first strand
Strand 2	D	156	161	anti-parallel
Strand 3	D	166	170	anti-parallel
Strand 4	D	175	180	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	192	first strand
Strand 2	D	198	203	anti-parallel
Strand 3	D	208	212	anti-parallel
Strand 4	D	218	222	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	234	first strand
Strand 2	D	240	245	anti-parallel
Strand 3	D	249	254	anti-parallel
Strand 4	D	259	265	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	294	298	anti-parallel
Strand 4	D	304	308	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	122	126	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	148	149	first strand
Strand 2	R	153	154	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HAO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAO