Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HAP entry

There are 2 chains in PDB entry 8HAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3LEU 468
B
 GLU 3LEU 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8HAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 42Right-handed alpha
Helix 2
AA2
A
45 63Right-handed alpha
Helix 3
AA3
A
63 76Right-handed alpha
Helix 4
AA4
A
78 104Right-handed alpha
Helix 5
AA5
A
110 114Right-handed 310
Helix 6
AA6
A
119 121Right-handed 310
Helix 7
AA7
A
145 159Right-handed alpha
Helix 8
AA8
A
171 184Right-handed alpha
Helix 9
AA9
A
187 189Right-handed 310
Helix 10
AB1
A
197 202Right-handed alpha
Helix 11
AB2
A
203 208Right-handed alpha
Helix 12
AB3
A
219 233Right-handed alpha
Helix 13
AB4
A
254 268Right-handed alpha
Helix 14
AB5
A
269 272Right-handed 310
Helix 15
AB6
A
286 300Right-handed alpha
Helix 16
AB7
A
318 334Right-handed alpha
Helix 17
AB8
A
364 369Right-handed alpha
Helix 18
AB9
A
383 393Right-handed alpha
Helix 19
AC1
A
406 416Right-handed alpha
Helix 20
AC2
A
440 442Right-handed 310
Helix 21
AC3
A
449 457Right-handed alpha
Helix 22
AC4
B
23 42Right-handed alpha
Helix 23
AC5
B
45 63Right-handed alpha
Helix 24
AC6
B
63 76Right-handed alpha
Helix 25
AC7
B
78 104Right-handed alpha
Helix 26
AC8
B
110 114Right-handed 310
Helix 27
AC9
B
119 121Right-handed 310
Helix 28
AD1
B
143 159Right-handed alpha
Helix 29
AD2
B
171 184Right-handed alpha
Helix 30
AD3
B
187 189Right-handed 310
Helix 31
AD4
B
197 208Right-handed alpha
Helix 32
AD5
B
219 233Right-handed alpha
Helix 33
AD6
B
254 268Right-handed alpha
Helix 34
AD7
B
269 272Right-handed 310
Helix 35
AD8
B
284 301Right-handed alpha
Helix 36
AD9
B
318 334Right-handed alpha
Helix 37
AE1
B
364 369Right-handed alpha
Helix 38
AE2
B
383 392Right-handed alpha
Helix 39
AE3
B
406 415Right-handed alpha
Helix 40
AE4
B
440 442Right-handed 310
Helix 41
AE5
B
449 457Right-handed alpha
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There are 6 sheets in PDB entry 8HAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
15 20anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
123 131anti-parallel
Strand 3
A
458 466anti-parallel
Strand 4
B
421 424parallel
Strand 5
B
399 403parallel
Strand 6
B
245 249parallel
Strand 7
B
277 283parallel
Strand 8
B
375 381parallel
Strand 9
B
354 358parallel
Strand 10
B
338 343anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
161 165parallel
Strand 3
A
134 138parallel
Strand 4
A
211 217parallel
Strand 5
A
236 240parallel
Strand 6
A
444 445anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 343first strand
Strand 2
A
354 358anti-parallel
Strand 3
A
375 381parallel
Strand 4
A
277 283parallel
Strand 5
A
245 249parallel
Strand 6
A
399 403parallel
Strand 7
A
421 424parallel
Strand 8
B
458 466parallel
Strand 9
B
123 131anti-parallel
Strand 10
B
108 109anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
15 20anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
161 165parallel
Strand 3
B
134 138parallel
Strand 4
B
211 217parallel
Strand 5
B
236 240parallel
Strand 6
B
444 445anti-parallel
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