Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HAR entry

There are 2 chains in PDB entry 8HAR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 357
B
 MET 1VAL 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8HAR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
15 29Right-handed alpha
Helix 3
AA3
A
30 38Right-handed alpha
Helix 4
AA4
A
42 51Right-handed alpha
Helix 5
AA5
A
53 67Right-handed alpha
Helix 6
AA6
A
83 87Right-handed 310
Helix 7
AA7
A
88 106Right-handed alpha
Helix 8
AA8
A
108 111Right-handed 310
Helix 9
AA9
A
112 120Right-handed alpha
Helix 10
AB1
A
122 130Right-handed alpha
Helix 11
AB2
A
135 140Right-handed alpha
Helix 12
AB3
A
143 167Right-handed alpha
Helix 13
AB4
A
185 196Right-handed alpha
Helix 14
AB5
A
207 209Right-handed 310
Helix 15
AB6
A
210 222Right-handed alpha
Helix 16
AB7
A
233 237Right-handed 310
Helix 17
AB8
A
250 254Right-handed 310
Helix 18
AB9
A
255 269Right-handed alpha
Helix 19
AC1
A
293 296Right-handed 310
Helix 20
AC2
A
297 305Right-handed alpha
Helix 21
AC3
A
315 325Right-handed alpha
Helix 22
AC4
A
336 340Right-handed 310
Helix 23
AC5
B
2 15Right-handed alpha
Helix 24
AC6
B
15 29Right-handed alpha
Helix 25
AC7
B
30 38Right-handed alpha
Helix 26
AC8
B
42 51Right-handed alpha
Helix 27
AC9
B
53 67Right-handed alpha
Helix 28
AD1
B
88 106Right-handed alpha
Helix 29
AD2
B
108 111Right-handed 310
Helix 30
AD3
B
112 120Right-handed alpha
Helix 31
AD4
B
122 130Right-handed alpha
Helix 32
AD5
B
135 140Right-handed alpha
Helix 33
AD6
B
143 167Right-handed alpha
Helix 34
AD7
B
185 196Right-handed alpha
Helix 35
AD8
B
207 209Right-handed 310
Helix 36
AD9
B
210 221Right-handed alpha
Helix 37
AE1
B
233 237Right-handed 310
Helix 38
AE2
B
250 254Right-handed 310
Helix 39
AE3
B
255 270Right-handed alpha
Helix 40
AE4
B
293 305Right-handed alpha
Helix 41
AE5
B
315 325Right-handed alpha
Helix 42
AE6
B
336 340Right-handed 310
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There are 6 sheets in PDB entry 8HAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
79 81anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 231first strand
Strand 2
A
201 206parallel
Strand 3
A
176 180parallel
Strand 4
A
244 248parallel
Strand 5
A
275 283parallel
Strand 6
A
313 314parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 231first strand
Strand 2
A
201 206parallel
Strand 3
A
176 180parallel
Strand 4
A
244 248parallel
Strand 5
A
275 283parallel
Strand 6
A
348 355anti-parallel
Strand 7
A
327 334anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
79 81anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 231first strand
Strand 2
B
201 206parallel
Strand 3
B
176 180parallel
Strand 4
B
244 248parallel
Strand 5
B
275 283parallel
Strand 6
B
313 314parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 231first strand
Strand 2
B
201 206parallel
Strand 3
B
176 180parallel
Strand 4
B
244 248parallel
Strand 5
B
275 283parallel
Strand 6
B
348 355anti-parallel
Strand 7
B
327 334anti-parallel
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