Analysis of interatomic Contacts of Structural Units in PDB entry:
8HAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HAV entry

There are 2 chains in PDB entry 8HAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 12ILE 415
B
 TYR 12ILE 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8HAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 32Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
80 90Right-handed alpha
Helix 4
AA4
A
109 118Right-handed alpha
Helix 5
AA5
A
121 126Right-handed alpha
Helix 6
AA6
A
130 133Right-handed 310
Helix 7
AA7
A
134 144Right-handed alpha
Helix 8
AA8
A
157 168Right-handed alpha
Helix 9
AA9
A
177 184Right-handed alpha
Helix 10
AB1
A
189 197Right-handed alpha
Helix 11
AB2
A
209 218Right-handed 310
Helix 12
AB3
A
219 224Right-handed alpha
Helix 13
AB4
A
229 239Right-handed alpha
Helix 14
AB5
A
269 285Right-handed alpha
Helix 15
AB6
A
288 290Right-handed 310
Helix 16
AB7
A
368 378Right-handed alpha
Helix 17
AB8
A
394 398Right-handed 310
Helix 18
AB9
B
26 32Right-handed alpha
Helix 19
AC1
B
33 37Right-handed 310
Helix 20
AC2
B
80 90Right-handed alpha
Helix 21
AC3
B
109 118Right-handed alpha
Helix 22
AC4
B
121 126Right-handed alpha
Helix 23
AC5
B
130 133Right-handed 310
Helix 24
AC6
B
134 144Right-handed alpha
Helix 25
AC7
B
157 168Right-handed alpha
Helix 26
AC8
B
177 184Right-handed alpha
Helix 27
AC9
B
189 197Right-handed alpha
Helix 28
AD1
B
209 218Right-handed 310
Helix 29
AD2
B
219 224Right-handed alpha
Helix 30
AD3
B
229 239Right-handed alpha
Helix 31
AD4
B
269 285Right-handed alpha
Helix 32
AD5
B
288 290Right-handed 310
Helix 33
AD6
B
368 378Right-handed alpha
Helix 34
AD7
B
385 391Right-handed alpha
Helix 35
AD8
B
394 398Right-handed 310
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There are 8 sheets in PDB entry 8HAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
202 205parallel
Strand 3
A
245 249parallel
Strand 4
A
16 22parallel
Strand 5
A
292 298parallel
Strand 6
A
340 343anti-parallel
Strand 7
A
145 147anti-parallel
Strand 8
A
351 353parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
62 65anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
266 268anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
365 366parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 228first strand
Strand 2
B
201 205parallel
Strand 3
B
245 249parallel
Strand 4
B
16 22parallel
Strand 5
B
292 298parallel
Strand 6
B
340 343anti-parallel
Strand 7
B
145 147anti-parallel
Strand 8
B
351 353parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
62 65anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
267 268anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
365 366parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il