Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HBB entry

There are 4 chains in PDB entry 8HBB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 34	LYS 288
B	LYS 34	LYS 288
C	HIS 35	LYS 288
D	HIS 35	THR 289

There are 32 helices in PDB entry 8HBB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	72	Right-handed alpha
Helix 2	AA2	A	94	108	Right-handed alpha
Helix 3	AA3	A	144	156	Right-handed alpha
Helix 4	AA4	A	156	161	Right-handed alpha
Helix 5	AA5	A	231	236	Right-handed alpha
Helix 6	AA6	A	242	246	Right-handed 310
Helix 7	AA7	A	272	282	Right-handed alpha
Helix 8	AA8	B	34	38	Right-handed 310
Helix 9	AA9	B	61	73	Right-handed alpha
Helix 10	AB1	B	94	107	Right-handed alpha
Helix 11	AB2	B	114	116	Right-handed 310
Helix 12	AB3	B	144	156	Right-handed alpha
Helix 13	AB4	B	176	178	Right-handed 310
Helix 14	AB5	B	242	246	Right-handed 310
Helix 15	AB6	B	272	282	Right-handed alpha
Helix 16	AB7	C	61	72	Right-handed alpha
Helix 17	AB8	C	73	75	Right-handed 310
Helix 18	AB9	C	94	108	Right-handed alpha
Helix 19	AC1	C	144	156	Right-handed alpha
Helix 20	AC2	C	156	161	Right-handed alpha
Helix 21	AC3	C	230	236	Right-handed alpha
Helix 22	AC4	C	243	246	Right-handed 310
Helix 23	AC5	C	272	282	Right-handed alpha
Helix 24	AC6	D	61	72	Right-handed alpha
Helix 25	AC7	D	73	75	Right-handed 310
Helix 26	AC8	D	94	108	Right-handed alpha
Helix 27	AC9	D	144	156	Right-handed alpha
Helix 28	AD1	D	156	161	Right-handed alpha
Helix 29	AD2	D	230	236	Right-handed alpha
Helix 30	AD3	D	243	246	Right-handed 310
Helix 31	AD4	D	260	263	Right-handed 310
Helix 32	AD5	D	272	282	Right-handed alpha

There are 17 sheets in PDB entry 8HBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	39	44	anti-parallel
Strand 3	A	215	221	parallel
Strand 4	A	204	210	anti-parallel
Strand 5	A	238	241	anti-parallel
Strand 6	A	181	184	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	226	229	anti-parallel
Strand 3	A	191	200	anti-parallel
Strand 4	A	249	258	anti-parallel
Strand 5	A	165	174	anti-parallel
Strand 6	A	118	122	anti-parallel
Strand 7	A	111	112	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	132	134	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	283	284	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	39	44	anti-parallel
Strand 3	B	215	221	parallel
Strand 4	B	204	210	anti-parallel
Strand 5	B	238	241	anti-parallel
Strand 6	B	181	184	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	B	226	229	anti-parallel
Strand 3	B	195	200	anti-parallel
Strand 4	B	249	257	anti-parallel
Strand 5	B	165	174	anti-parallel
Strand 6	B	118	122	anti-parallel
Strand 7	B	111	112	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	127	first strand
Strand 2	B	132	134	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	283	284	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	39	44	anti-parallel
Strand 3	C	215	220	parallel
Strand 4	C	205	210	anti-parallel
Strand 5	C	238	241	anti-parallel
Strand 6	C	181	184	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	226	229	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	249	257	anti-parallel
Strand 5	C	170	174	anti-parallel
Strand 6	C	118	120	anti-parallel
Strand 7	C	111	112	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	89	first strand
Strand 2	C	226	229	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	249	257	anti-parallel
Strand 5	C	165	167	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	127	first strand
Strand 2	C	132	134	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	142	first strand
Strand 2	C	283	284	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	39	44	anti-parallel
Strand 3	D	215	221	parallel
Strand 4	D	204	210	anti-parallel
Strand 5	D	238	241	anti-parallel
Strand 6	D	181	184	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	89	first strand
Strand 2	D	226	229	anti-parallel
Strand 3	D	191	200	anti-parallel
Strand 4	D	249	258	anti-parallel
Strand 5	D	167	174	anti-parallel
Strand 6	D	118	120	anti-parallel
Strand 7	D	111	112	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	127	first strand
Strand 2	D	132	134	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	283	284	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HBB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBB