Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HBC entry

There are 2 chains in PDB entry 8HBC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 32	SER 627
B	ALA 32	SER 627

There are 13 helices in PDB entry 8HBC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	117	121	Right-handed 310
Helix 2	AA2	A	239	249	Right-handed alpha
Helix 3	AA3	A	259	268	Right-handed alpha
Helix 4	AA4	A	381	392	Right-handed alpha
Helix 5	AA5	A	401	411	Right-handed alpha
Helix 6	AA6	A	502	506	Right-handed 310
Helix 7	AA7	A	534	549	Right-handed alpha
Helix 8	AA8	B	117	121	Right-handed 310
Helix 9	AA9	B	239	250	Right-handed alpha
Helix 10	AB1	B	259	265	Right-handed alpha
Helix 11	AB2	B	381	392	Right-handed alpha
Helix 12	AB3	B	401	411	Right-handed alpha
Helix 13	AB4	B	534	549	Right-handed alpha

There are 26 sheets in PDB entry 8HBC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	140	142	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	50	first strand
Strand 2	A	53	57	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	74	77	anti-parallel
Strand 3	A	82	87	anti-parallel
Strand 4	A	94	98	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	114	116	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	129	133	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	160	first strand
Strand 2	A	206	209	anti-parallel
Strand 3	A	192	195	anti-parallel
Strand 4	A	184	185	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	178	180	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	238	first strand
Strand 2	A	336	343	anti-parallel
Strand 3	A	253	254	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	275	281	anti-parallel
Strand 3	A	317	321	anti-parallel
Strand 4	A	327	330	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	432	433	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	368	first strand
Strand 2	A	371	380	anti-parallel
Strand 3	A	481	488	anti-parallel
Strand 4	A	395	396	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	368	first strand
Strand 2	A	371	380	anti-parallel
Strand 3	A	481	488	anti-parallel
Strand 4	A	421	427	parallel
Strand 5	A	461	466	anti-parallel
Strand 6	A	471	476	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	513	523	anti-parallel
Strand 3	A	618	625	anti-parallel
Strand 4	A	556	561	parallel
Strand 5	A	597	600	anti-parallel
Strand 6	A	610	612	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	140	142	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	50	first strand
Strand 2	B	53	57	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	74	77	anti-parallel
Strand 3	B	82	87	anti-parallel
Strand 4	B	94	98	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	114	116	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	126	first strand
Strand 2	B	129	133	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	193	195	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	178	180	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	228	238	first strand
Strand 2	B	336	343	anti-parallel
Strand 3	B	253	254	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	281	first strand
Strand 2	B	317	321	anti-parallel
Strand 3	B	327	330	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	432	435	anti-parallel
Strand 3	B	421	427	anti-parallel
Strand 4	B	481	488	parallel
Strand 5	B	395	396	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	368	first strand
Strand 2	B	371	380	anti-parallel
Strand 3	B	481	488	anti-parallel
Strand 4	B	421	427	parallel
Strand 5	B	461	466	anti-parallel
Strand 6	B	471	476	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	510	first strand
Strand 2	B	513	523	anti-parallel
Strand 3	B	618	625	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	556	561	first strand
Strand 2	B	597	600	anti-parallel
Strand 3	B	610	612	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HBC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBC