Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HBE entry

There are 2 chains in PDB entry 8HBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 69	TYR 660
B	MET 1	LYS 607

There are 44 helices in PDB entry 8HBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	83	Right-handed alpha
Helix 2	AA2	A	85	101	Right-handed alpha
Helix 3	AA3	A	115	126	Right-handed alpha
Helix 4	AA4	A	128	148	Right-handed alpha
Helix 5	AA5	A	158	174	Right-handed alpha
Helix 6	AA6	A	214	228	Right-handed alpha
Helix 7	AA7	A	237	242	Right-handed alpha
Helix 8	AA8	A	278	286	Right-handed alpha
Helix 9	AA9	A	302	310	Right-handed alpha
Helix 10	AB1	A	334	340	Right-handed alpha
Helix 11	AB2	A	389	391	Right-handed 310
Helix 12	AB3	A	392	397	Right-handed alpha
Helix 13	AB4	A	399	403	Right-handed 310
Helix 14	AB5	A	404	408	Right-handed 310
Helix 15	AB6	A	409	421	Right-handed alpha
Helix 16	AB7	A	422	425	Right-handed 310
Helix 17	AB8	A	426	458	Right-handed alpha
Helix 18	AB9	A	459	469	Right-handed alpha
Helix 19	AC1	A	489	496	Right-handed alpha
Helix 20	AC2	A	498	521	Right-handed alpha
Helix 21	AC3	A	544	563	Right-handed alpha
Helix 22	AC4	A	598	610	Right-handed alpha
Helix 23	AC5	A	619	628	Right-handed alpha
Helix 24	AC6	A	638	642	Right-handed 310
Helix 25	AC7	B	2	29	Right-handed alpha
Helix 26	AC8	B	44	59	Right-handed alpha
Helix 27	AC9	B	62	81	Right-handed alpha
Helix 28	AD1	B	83	90	Right-handed alpha
Helix 29	AD2	B	93	109	Right-handed alpha
Helix 30	AD3	B	142	157	Right-handed alpha
Helix 31	AD4	B	209	217	Right-handed alpha
Helix 32	AD5	B	233	240	Right-handed alpha
Helix 33	AD6	B	241	244	Right-handed 310
Helix 34	AD7	B	249	252	Right-handed 310
Helix 35	AD8	B	264	271	Right-handed alpha
Helix 36	AD9	B	330	335	Right-handed alpha
Helix 37	AE1	B	347	355	Right-handed alpha
Helix 38	AE2	B	362	395	Right-handed alpha
Helix 39	AE3	B	399	408	Right-handed alpha
Helix 40	AE4	B	429	436	Right-handed alpha
Helix 41	AE5	B	439	461	Right-handed alpha
Helix 42	AE6	B	491	507	Right-handed alpha
Helix 43	AE7	B	544	557	Right-handed alpha
Helix 44	AE8	B	565	573	Right-handed alpha

There are 9 sheets in PDB entry 8HBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	193	first strand
Strand 2	A	199	205	anti-parallel
Strand 3	A	252	259	anti-parallel
Strand 4	A	231	235	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	292	first strand
Strand 2	A	378	385	anti-parallel
Strand 3	A	364	373	anti-parallel
Strand 4	A	346	350	anti-parallel
Strand 5	A	324	328	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	532	536	anti-parallel
Strand 3	A	475	487	anti-parallel
Strand 4	A	573	587	anti-parallel
Strand 5	A	593	597	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	525	first strand
Strand 2	A	532	536	anti-parallel
Strand 3	A	475	487	anti-parallel
Strand 4	A	573	587	anti-parallel
Strand 5	A	616	618	parallel
Strand 6	A	655	657	anti-parallel
Strand 7	A	634	636	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	177	183	anti-parallel
Strand 4	B	162	168	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	220	224	anti-parallel
Strand 3	B	318	325	anti-parallel
Strand 4	B	305	313	anti-parallel
Strand 5	B	276	280	anti-parallel
Strand 6	B	254	258	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	472	first strand
Strand 2	B	479	483	anti-parallel
Strand 3	B	415	427	anti-parallel
Strand 4	B	519	533	anti-parallel
Strand 5	B	539	543	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	472	first strand
Strand 2	B	479	483	anti-parallel
Strand 3	B	415	427	anti-parallel
Strand 4	B	519	533	anti-parallel
Strand 5	B	562	564	parallel
Strand 6	B	599	606	anti-parallel
Strand 7	B	582	590	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	512	first strand
Strand 2	B	515	516	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBE