Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HBF entry

There are 2 chains in PDB entry 8HBF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 67	LYS 685
B	MET 1	ASN 608

There are 41 helices in PDB entry 8HBF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	83	Right-handed alpha
Helix 2	AA2	A	85	98	Right-handed alpha
Helix 3	AA3	A	115	126	Right-handed alpha
Helix 4	AA4	A	128	149	Right-handed alpha
Helix 5	AA5	A	151	155	Right-handed 310
Helix 6	AA6	A	158	171	Right-handed alpha
Helix 7	AA7	A	214	226	Right-handed alpha
Helix 8	AA8	A	278	286	Right-handed alpha
Helix 9	AA9	A	302	309	Right-handed alpha
Helix 10	AB1	A	319	323	Right-handed alpha
Helix 11	AB2	A	334	341	Right-handed alpha
Helix 12	AB3	A	404	407	Right-handed 310
Helix 13	AB4	A	408	458	Right-handed alpha
Helix 14	AB5	A	459	468	Right-handed alpha
Helix 15	AB6	A	489	497	Right-handed alpha
Helix 16	AB7	A	498	521	Right-handed alpha
Helix 17	AB8	A	544	561	Right-handed alpha
Helix 18	AB9	A	598	610	Right-handed alpha
Helix 19	AC1	A	619	627	Right-handed alpha
Helix 20	AC2	A	638	642	Right-handed 310
Helix 21	AC3	B	2	18	Right-handed alpha
Helix 22	AC4	B	18	29	Right-handed alpha
Helix 23	AC5	B	44	59	Right-handed alpha
Helix 24	AC6	B	62	81	Right-handed alpha
Helix 25	AC7	B	84	90	Right-handed alpha
Helix 26	AC8	B	93	100	Right-handed alpha
Helix 27	AC9	B	100	112	Right-handed alpha
Helix 28	AD1	B	144	159	Right-handed alpha
Helix 29	AD2	B	209	217	Right-handed alpha
Helix 30	AD3	B	233	240	Right-handed alpha
Helix 31	AD4	B	241	244	Right-handed 310
Helix 32	AD5	B	249	253	Right-handed alpha
Helix 33	AD6	B	264	271	Right-handed alpha
Helix 34	AD7	B	329	336	Right-handed alpha
Helix 35	AD8	B	348	398	Right-handed alpha
Helix 36	AD9	B	399	408	Right-handed alpha
Helix 37	AE1	B	429	437	Right-handed alpha
Helix 38	AE2	B	441	461	Right-handed alpha
Helix 39	AE3	B	491	507	Right-handed alpha
Helix 40	AE4	B	544	557	Right-handed alpha
Helix 41	AE5	B	565	573	Right-handed alpha

There are 9 sheets in PDB entry 8HBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	200	204	anti-parallel
Strand 3	A	254	257	anti-parallel
Strand 4	A	233	235	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	300	first strand
Strand 2	A	289	292	anti-parallel
Strand 3	A	378	385	anti-parallel
Strand 4	A	364	373	anti-parallel
Strand 5	A	346	350	anti-parallel
Strand 6	A	324	326	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	526	first strand
Strand 2	A	532	536	anti-parallel
Strand 3	A	475	487	anti-parallel
Strand 4	A	573	586	anti-parallel
Strand 5	A	594	597	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	526	first strand
Strand 2	A	532	536	anti-parallel
Strand 3	A	475	487	anti-parallel
Strand 4	A	573	586	anti-parallel
Strand 5	A	616	618	parallel
Strand 6	A	655	660	anti-parallel
Strand 7	A	632	636	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	124	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	177	183	anti-parallel
Strand 4	B	162	164	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	220	223	anti-parallel
Strand 3	B	318	325	anti-parallel
Strand 4	B	305	313	anti-parallel
Strand 5	B	276	280	anti-parallel
Strand 6	B	254	258	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	473	first strand
Strand 2	B	479	483	anti-parallel
Strand 3	B	415	427	anti-parallel
Strand 4	B	519	531	anti-parallel
Strand 5	B	541	543	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	470	473	first strand
Strand 2	B	479	483	anti-parallel
Strand 3	B	415	427	anti-parallel
Strand 4	B	519	531	anti-parallel
Strand 5	B	562	564	parallel
Strand 6	B	599	606	anti-parallel
Strand 7	B	582	590	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	512	first strand
Strand 2	B	515	516	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HBF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBF