Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HBH entry

There are 2 chains in PDB entry 8HBH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 67	LYS 685
B	MET 1	THR 609

There are 39 helices in PDB entry 8HBH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	83	Right-handed alpha
Helix 2	AA2	A	85	99	Right-handed alpha
Helix 3	AA3	A	115	126	Right-handed alpha
Helix 4	AA4	A	130	149	Right-handed alpha
Helix 5	AA5	A	151	155	Right-handed 310
Helix 6	AA6	A	158	171	Right-handed alpha
Helix 7	AA7	A	210	227	Right-handed alpha
Helix 8	AA8	A	278	286	Right-handed alpha
Helix 9	AA9	A	302	309	Right-handed alpha
Helix 10	AB1	A	319	323	Right-handed alpha
Helix 11	AB2	A	334	341	Right-handed alpha
Helix 12	AB3	A	404	407	Right-handed 310
Helix 13	AB4	A	408	458	Right-handed alpha
Helix 14	AB5	A	459	468	Right-handed alpha
Helix 15	AB6	A	489	497	Right-handed alpha
Helix 16	AB7	A	498	519	Right-handed alpha
Helix 17	AB8	A	544	560	Right-handed alpha
Helix 18	AB9	A	598	610	Right-handed alpha
Helix 19	AC1	A	619	627	Right-handed alpha
Helix 20	AC2	B	2	18	Right-handed alpha
Helix 21	AC3	B	18	29	Right-handed alpha
Helix 22	AC4	B	44	60	Right-handed alpha
Helix 23	AC5	B	62	82	Right-handed alpha
Helix 24	AC6	B	83	91	Right-handed alpha
Helix 25	AC7	B	93	112	Right-handed alpha
Helix 26	AC8	B	144	157	Right-handed alpha
Helix 27	AC9	B	209	217	Right-handed alpha
Helix 28	AD1	B	233	240	Right-handed alpha
Helix 29	AD2	B	241	244	Right-handed 310
Helix 30	AD3	B	249	252	Right-handed 310
Helix 31	AD4	B	264	271	Right-handed alpha
Helix 32	AD5	B	329	336	Right-handed alpha
Helix 33	AD6	B	348	398	Right-handed alpha
Helix 34	AD7	B	399	408	Right-handed alpha
Helix 35	AD8	B	429	437	Right-handed alpha
Helix 36	AD9	B	443	463	Right-handed alpha
Helix 37	AE1	B	491	507	Right-handed alpha
Helix 38	AE2	B	544	556	Right-handed alpha
Helix 39	AE3	B	566	573	Right-handed alpha

There are 8 sheets in PDB entry 8HBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	253	258	anti-parallel
Strand 3	A	232	234	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	289	292	anti-parallel
Strand 3	A	378	385	anti-parallel
Strand 4	A	364	373	anti-parallel
Strand 5	A	346	350	anti-parallel
Strand 6	A	324	326	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	528	first strand
Strand 2	A	531	536	anti-parallel
Strand 3	A	475	487	anti-parallel
Strand 4	A	573	585	anti-parallel
Strand 5	A	595	597	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	528	first strand
Strand 2	A	531	536	anti-parallel
Strand 3	A	475	487	anti-parallel
Strand 4	A	573	585	anti-parallel
Strand 5	A	615	618	parallel
Strand 6	A	654	658	anti-parallel
Strand 7	A	633	638	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	177	181	anti-parallel
Strand 4	B	164	168	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	220	224	anti-parallel
Strand 3	B	318	322	anti-parallel
Strand 4	B	305	313	anti-parallel
Strand 5	B	276	280	anti-parallel
Strand 6	B	254	258	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	475	first strand
Strand 2	B	478	483	anti-parallel
Strand 3	B	415	427	anti-parallel
Strand 4	B	519	531	anti-parallel
Strand 5	B	541	543	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	475	first strand
Strand 2	B	478	483	anti-parallel
Strand 3	B	415	427	anti-parallel
Strand 4	B	519	531	anti-parallel
Strand 5	B	562	565	parallel
Strand 6	B	599	605	anti-parallel
Strand 7	B	583	590	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HBH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBH