Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HBM entry

There are 8 chains in PDB entry 8HBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 131ARG 209
B
 ASP 124CYS 196
C
 C 1 G 18
D
 C 1 G 18
E
 LYS 132ARG 209
F
 ASP 124CYS 196
G
 C 1 G 18
H
 C 1 G 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8HBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
152 166Right-handed alpha
Helix 2
AA2
A
187 198Right-handed alpha
Helix 3
AA3
A
201 205Right-handed 310
Helix 4
AA4
B
144 158Right-handed alpha
Helix 5
AA5
B
174 179Right-handed alpha
Helix 6
AA6
B
180 190Right-handed alpha
Helix 7
AA7
E
152 166Right-handed alpha
Helix 8
AA8
E
187 198Right-handed alpha
Helix 9
AA9
E
201 205Right-handed 310
Helix 10
AB1
F
144 152Right-handed alpha
Helix 11
AB2
F
154 156Right-handed 310
Helix 12
AB3
F
174 179Right-handed alpha
Helix 13
AB4
F
180 190Right-handed alpha
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There are 4 sheets in PDB entry 8HBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
141 142anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
149 151anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
133 134first strand
Strand 2
E
141 142anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
145 146first strand
Strand 2
E
149 150anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il