Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HBN entry

There are 2 chains in PDB entry 8HBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 101THR 477
B
 MET 8ILE 184
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8HBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
101 114Right-handed alpha
Helix 2
AA2
A
126 129Right-handed 310
Helix 3
AA3
A
130 135Right-handed alpha
Helix 4
AA4
A
148 159Right-handed alpha
Helix 5
AA5
A
177 184Right-handed 310
Helix 6
AA6
A
206 210Right-handed 310
Helix 7
AA7
A
224 230Right-handed 310
Helix 8
AA8
A
231 240Right-handed alpha
Helix 9
AA9
A
254 260Right-handed alpha
Helix 10
AB1
A
274 295Right-handed alpha
Helix 11
AB2
A
297 301Right-handed 310
Helix 12
AB3
A
331 335Right-handed 310
Helix 13
AB4
A
346 354Right-handed alpha
Helix 14
AB5
A
357 368Right-handed alpha
Helix 15
AB6
B
12 31Right-handed alpha
Helix 16
AB7
B
37 45Right-handed alpha
Helix 17
AB8
B
61 72Right-handed alpha
Helix 18
AB9
B
156 160Right-handed 310
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There are 3 sheets in PDB entry 8HBN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
121 123anti-parallel
Strand 3
A
166 168parallel
Strand 4
A
193 194parallel
Strand 5
A
218 220parallel
Strand 6
A
245 246parallel
Strand 7
A
249 250anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
384 389parallel
Strand 3
A
394 403anti-parallel
Strand 4
A
443 452anti-parallel
Strand 5
A
459 468anti-parallel
Strand 6
A
303 313parallel
Strand 7
A
355 356anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
166 173parallel
Strand 3
B
147 154anti-parallel
Strand 4
B
93 101anti-parallel
Strand 5
B
79 88anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il