Analysis of interatomic Contacts of Structural Units in PDB entry:
8HBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HBV entry

There are 2 chains in PDB entry 8HBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 9SER 298
B
 GLN 1HIS 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8HBV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 42Right-handed alpha
Helix 2
AA2
A
56 69Right-handed alpha
Helix 3
AA3
A
76 105Right-handed alpha
Helix 4
AA4
A
111 143Right-handed alpha
Helix 5
AA5
A
155 168Right-handed alpha
Helix 6
AA6
A
169 174Right-handed 310
Helix 7
AA7
A
175 204Right-handed alpha
Helix 8
AA8
A
210 242Right-handed alpha
Helix 9
AA9
A
249 262Right-handed alpha
Helix 10
AB1
A
264 268Right-handed 310
Helix 11
AB2
A
269 297Right-handed alpha
Helix 12
AB3
B
28 32Right-handed 310
Helix 13
AB4
B
87 91Right-handed 310
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There are 3 sheets in PDB entry 8HBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
115 120parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
115 120parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
108 111anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il