Analysis of interatomic Contacts of Structural Units in PDB entry:
8HC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HC0 entry

There are 3 chains in PDB entry 8HC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 207LEU 566
C
 THR 567SER 579
B
 THR 150GLY 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8HC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
219 229Right-handed alpha
Helix 2
AA2
A
230 239Right-handed alpha
Helix 3
AA3
A
302 312Right-handed alpha
Helix 4
AA4
A
319 337Right-handed alpha
Helix 5
AA5
A
341 363Right-handed alpha
Helix 6
AA6
A
367 382Right-handed alpha
Helix 7
AA7
A
383 385Right-handed 310
Helix 8
AA8
A
386 397Right-handed alpha
Helix 9
AA9
A
399 413Right-handed alpha
Helix 10
AB1
A
414 415Right-handed 310
Helix 11
AB2
A
416 420Right-handed 310
Helix 12
AB3
A
439 444Right-handed alpha
Helix 13
AB4
A
467 472Right-handed 310
Helix 14
AB5
A
486 491Right-handed alpha
Helix 15
AB6
B
163 168Right-handed 310
Helix 16
AB7
B
171 190Right-handed alpha
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There are 7 sheets in PDB entry 8HC0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
B
151 158anti-parallel
Strand 3
A
208 216anti-parallel
Strand 4
B
195 204anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
264 265anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
282 288anti-parallel
Strand 3
A
291 297anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
300 301anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 425first strand
Strand 2
A
429 435anti-parallel
Strand 3
A
478 484anti-parallel
Strand 4
A
505 510anti-parallel
Strand 5
C
568 575anti-parallel
Strand 6
A
500 501anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 425first strand
Strand 2
A
429 435anti-parallel
Strand 3
A
478 484anti-parallel
Strand 4
A
505 510anti-parallel
Strand 5
C
568 575anti-parallel
Strand 6
A
529 538anti-parallel
Strand 7
A
543 545anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 451first strand
Strand 2
A
460 466anti-parallel
Strand 3
A
518 523anti-parallel
Strand 4
A
558 563anti-parallel
Strand 5
A
549 554anti-parallel
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