Analysis of interatomic Contacts of Structural Units in PDB entry:
8HC7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HC7 entry

There are 4 chains in PDB entry 8HC7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLN 14	GLY 526
A	PRO 322	THR 588
H	GLU 1	SER 115
L	ASP 1	ILE 107

There are 10 helices in PDB entry 8HC7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	338	343	Right-handed alpha
Helix 2	AA2	C	365	370	Right-handed alpha
Helix 3	AA3	C	385	389	Right-handed 310
Helix 4	AA4	C	404	410	Right-handed alpha
Helix 5	AA5	C	416	422	Right-handed alpha
Helix 6	AA6	A	337	342	Right-handed alpha
Helix 7	AA7	A	364	370	Right-handed 310
Helix 8	AA8	A	386	391	Right-handed alpha
Helix 9	AA9	A	406	411	Right-handed 310
Helix 10	AB1	A	417	422	Right-handed alpha

There are 19 sheets in PDB entry 8HC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	61	67	anti-parallel
Strand 3	C	263	269	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	188	197	anti-parallel
Strand 6	C	207	209	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	61	67	anti-parallel
Strand 3	C	263	269	anti-parallel
Strand 4	C	90	96	anti-parallel
Strand 5	C	188	197	anti-parallel
Strand 6	C	200	204	anti-parallel
Strand 7	C	225	229	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	51	first strand
Strand 2	C	275	278	anti-parallel
Strand 3	C	287	289	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	271	272	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	237	240	anti-parallel
Strand 3	C	104	107	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	121	first strand
Strand 2	C	126	129	anti-parallel
Strand 3	C	169	172	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	142	first strand
Strand 2	C	156	158	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	395	403	anti-parallel
Strand 3	C	507	515	anti-parallel
Strand 4	C	432	437	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	403	first strand
Strand 2	A	507	514	anti-parallel
Strand 3	A	431	436	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	543	first strand
Strand 2	A	546	550	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	68	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	110	113	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	47	51	anti-parallel
Strand 6	H	57	58	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	110	113	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	102	105	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	24	25	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	104	106	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	46	first strand
Strand 2	L	34	37	anti-parallel
Strand 3	L	87	91	anti-parallel
Strand 4	L	97	99	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	49	first strand
Strand 2	L	53	54	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	62	65	first strand
Strand 2	L	72	75	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HC7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HC7