Analysis of interatomic Contacts of Structural Units in PDB entry:
8HC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HC8 entry

There are 3 chains in PDB entry 8HC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ILE 332LEU 517
H
 VAL 2PRO 234
L
 ASP 1CYS 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8HC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
365 370Right-handed 310
Helix 2
AA2
C
406 410Right-handed 310
Helix 3
AA3
C
416 422Right-handed alpha
Helix 4
AA4
C
502 506Right-handed 310
Helix 5
AA5
H
78 80Right-handed 310
Helix 6
AA6
H
177 179Right-handed 310
Helix 7
AA7
H
208 210Right-handed 310
Helix 8
AA8
L
126 131Right-handed alpha
Helix 9
AA9
L
188 193Right-handed alpha
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There are 14 sheets in PDB entry 8HC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
356 358first strand
Strand 2
C
395 402anti-parallel
Strand 3
C
508 515anti-parallel
Strand 4
C
431 437anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
452 454first strand
Strand 2
C
492 494anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
473 474first strand
Strand 2
C
488 489anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 7first strand
Strand 2
H
20 24anti-parallel
Strand 3
H
82 86anti-parallel
Strand 4
H
73 77anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
128 132parallel
Strand 3
H
96 102anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
62 64anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
128 132parallel
Strand 3
H
96 102anti-parallel
Strand 4
H
123 124anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
141 144first strand
Strand 2
H
156 166anti-parallel
Strand 3
H
197 206anti-parallel
Strand 4
H
184 186anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
141 144first strand
Strand 2
H
156 166anti-parallel
Strand 3
H
197 206anti-parallel
Strand 4
H
190 191anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
172 175first strand
Strand 2
H
216 221anti-parallel
Strand 3
H
226 231anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 6first strand
Strand 2
L
22 24anti-parallel
Strand 3
L
75 77anti-parallel
Strand 4
L
70 72anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
12 13first strand
Strand 2
L
110 111parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
50 53first strand
Strand 2
L
40 43anti-parallel
Strand 3
L
90 93anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
121 123first strand
Strand 2
L
134 142anti-parallel
Strand 3
L
179 187anti-parallel
Strand 4
L
164 168anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
152 155first strand
Strand 2
L
196 201anti-parallel
Strand 3
L
210 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il