Analysis of interatomic Contacts of Structural Units in PDB entry:
8HCN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HCN entry

There are 12 chains in PDB entry 8HCN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 100
B	MET 1	VAL 103
C	SER 2	PHE 567
D	LYS 11	THR 274
E	MET 1	ILE 100
F	MET 1	VAL 103
G	SER 2	PHE 567
H	LYS 11	THR 274
I	MET 1	ILE 100
J	MET 1	VAL 103
K	SER 2	PHE 567
L	LYS 11	THR 274

There are 98 helices in PDB entry 8HCN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	27	Right-handed alpha
Helix 2	AA2	A	31	50	Right-handed alpha
Helix 3	AA3	A	52	60	Right-handed alpha
Helix 4	AA4	A	61	63	Right-handed 310
Helix 5	AA5	A	67	69	Right-handed 310
Helix 6	AA6	A	72	77	Right-handed alpha
Helix 7	AA7	B	41	45	Right-handed 310
Helix 8	AA8	C	6	14	Right-handed alpha
Helix 9	AA9	C	61	65	Right-handed 310
Helix 10	AB1	C	140	150	Right-handed alpha
Helix 11	AB2	C	162	168	Right-handed alpha
Helix 12	AB3	C	172	185	Right-handed alpha
Helix 13	AB4	C	201	212	Right-handed alpha
Helix 14	AB5	C	221	223	Right-handed 310
Helix 15	AB6	C	225	240	Right-handed alpha
Helix 16	AB7	C	255	264	Right-handed alpha
Helix 17	AB8	C	282	290	Right-handed 310
Helix 18	AB9	C	298	302	Right-handed 310
Helix 19	AC1	C	311	320	Right-handed alpha
Helix 20	AC2	C	328	333	Right-handed 310
Helix 21	AC3	C	338	351	Right-handed alpha
Helix 22	AC4	C	369	386	Right-handed alpha
Helix 23	AC5	C	396	405	Right-handed alpha
Helix 24	AC6	C	409	415	Right-handed alpha
Helix 25	AC7	C	436	440	Right-handed 310
Helix 26	AC8	C	477	479	Right-handed 310
Helix 27	AC9	C	480	487	Right-handed alpha
Helix 28	AD1	C	493	500	Right-handed alpha
Helix 29	AD2	C	500	505	Right-handed alpha
Helix 30	AD3	D	207	218	Right-handed alpha
Helix 31	AD4	D	219	225	Right-handed 310
Helix 32	AD5	D	244	263	Right-handed alpha
Helix 33	AD6	D	269	273	Right-handed 310
Helix 34	AD7	E	4	27	Right-handed alpha
Helix 35	AD8	E	31	50	Right-handed alpha
Helix 36	AD9	E	52	60	Right-handed alpha
Helix 37	AE1	E	61	63	Right-handed 310
Helix 38	AE2	E	67	69	Right-handed 310
Helix 39	AE3	E	72	77	Right-handed alpha
Helix 40	AE4	F	41	45	Right-handed 310
Helix 41	AE5	G	6	14	Right-handed alpha
Helix 42	AE6	G	61	65	Right-handed 310
Helix 43	AE7	G	140	150	Right-handed alpha
Helix 44	AE8	G	162	168	Right-handed alpha
Helix 45	AE9	G	172	185	Right-handed alpha
Helix 46	AF1	G	201	212	Right-handed alpha
Helix 47	AF2	G	225	240	Right-handed alpha
Helix 48	AF3	G	255	264	Right-handed alpha
Helix 49	AF4	G	282	290	Right-handed 310
Helix 50	AF5	G	298	302	Right-handed 310
Helix 51	AF6	G	311	320	Right-handed alpha
Helix 52	AF7	G	328	333	Right-handed 310
Helix 53	AF8	G	338	351	Right-handed alpha
Helix 54	AF9	G	369	386	Right-handed alpha
Helix 55	AG1	G	396	405	Right-handed alpha
Helix 56	AG2	G	409	415	Right-handed alpha
Helix 57	AG3	G	436	440	Right-handed 310
Helix 58	AG4	G	477	479	Right-handed 310
Helix 59	AG5	G	480	487	Right-handed alpha
Helix 60	AG6	G	493	500	Right-handed alpha
Helix 61	AG7	G	500	506	Right-handed alpha
Helix 62	AG8	G	521	525	Right-handed 310
Helix 63	AG9	H	207	218	Right-handed alpha
Helix 64	AH1	H	219	225	Right-handed 310
Helix 65	AH2	H	244	263	Right-handed alpha
Helix 66	AH3	H	269	273	Right-handed 310
Helix 67	AH4	I	4	27	Right-handed alpha
Helix 68	AH5	I	31	50	Right-handed alpha
Helix 69	AH6	I	52	60	Right-handed alpha
Helix 70	AH7	I	61	63	Right-handed 310
Helix 71	AH8	I	67	69	Right-handed 310
Helix 72	AH9	I	72	77	Right-handed alpha
Helix 73	AI1	J	41	45	Right-handed 310
Helix 74	AI2	K	6	14	Right-handed alpha
Helix 75	AI3	K	61	65	Right-handed 310
Helix 76	AI4	K	140	150	Right-handed alpha
Helix 77	AI5	K	162	168	Right-handed alpha
Helix 78	AI6	K	172	185	Right-handed alpha
Helix 79	AI7	K	201	212	Right-handed alpha
Helix 80	AI8	K	225	240	Right-handed alpha
Helix 81	AI9	K	255	264	Right-handed alpha
Helix 82	AJ1	K	282	290	Right-handed 310
Helix 83	AJ2	K	298	302	Right-handed 310
Helix 84	AJ3	K	311	320	Right-handed alpha
Helix 85	AJ4	K	328	333	Right-handed 310
Helix 86	AJ5	K	338	351	Right-handed alpha
Helix 87	AJ6	K	369	386	Right-handed alpha
Helix 88	AJ7	K	396	405	Right-handed alpha
Helix 89	AJ8	K	409	415	Right-handed alpha
Helix 90	AJ9	K	436	440	Right-handed 310
Helix 91	AK1	K	477	479	Right-handed 310
Helix 92	AK2	K	480	487	Right-handed alpha
Helix 93	AK3	K	493	499	Right-handed alpha
Helix 94	AK4	K	500	505	Right-handed alpha
Helix 95	AK5	L	207	218	Right-handed alpha
Helix 96	AK6	L	219	225	Right-handed 310
Helix 97	AK7	L	244	263	Right-handed alpha
Helix 98	AK8	L	269	273	Right-handed 310

There are 48 sheets in PDB entry 8HCN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	99	100	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	86	first strand
Strand 2	A	89	96	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	K	20	22	anti-parallel
Strand 3	K	29	31	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	K	3	5	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	21	28	anti-parallel
Strand 3	B	76	83	anti-parallel
Strand 4	B	59	61	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	68	71	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	99	100	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	F	12	14	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	20	22	anti-parallel
Strand 3	F	6	7	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	80	89	parallel
Strand 3	C	68	77	anti-parallel
Strand 4	C	117	120	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	97	first strand
Strand 2	C	80	89	anti-parallel
Strand 3	C	68	77	anti-parallel
Strand 4	C	125	128	parallel
Strand 5	C	431	435	anti-parallel
Strand 6	C	446	449	anti-parallel
Strand 7	C	452	458	anti-parallel
Strand 8	C	472	475	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	110	111	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	136	first strand
Strand 2	C	151	157	parallel
Strand 3	C	190	196	parallel
Strand 4	C	215	219	parallel
Strand 5	C	242	246	parallel
Strand 6	C	268	270	parallel
Strand 7	C	293	295	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	492	first strand
Strand 2	C	510	513	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	535	first strand
Strand 2	C	544	545	anti-parallel
Strand 3	C	548	549	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	36	first strand
Strand 2	D	14	24	anti-parallel
Strand 3	D	68	75	parallel
Strand 4	D	99	107	parallel
Strand 5	D	128	136	parallel
Strand 6	D	164	172	parallel
Strand 7	D	176	184	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	55	first strand
Strand 2	D	80	84	parallel
Strand 3	D	112	116	parallel
Strand 4	D	141	150	parallel
Strand 5	D	120	122	parallel
Strand 6	D	89	91	parallel
Strand 7	D	62	63	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	55	first strand
Strand 2	D	80	84	parallel
Strand 3	D	112	116	parallel
Strand 4	D	141	150	parallel
Strand 5	D	197	203	anti-parallel
Strand 6	D	233	240	anti-parallel
Strand 7	D	226	230	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	65	first strand
Strand 2	E	99	100	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	86	first strand
Strand 2	E	89	96	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	50	first strand
Strand 2	F	21	28	anti-parallel
Strand 3	F	76	83	anti-parallel
Strand 4	F	59	61	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	37	first strand
Strand 2	F	68	71	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	90	first strand
Strand 2	F	99	100	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	5	first strand
Strand 2	J	12	14	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	31	first strand
Strand 2	G	20	22	anti-parallel
Strand 3	J	6	7	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	35	first strand
Strand 2	G	80	89	parallel
Strand 3	G	68	77	anti-parallel
Strand 4	G	117	120	parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	97	first strand
Strand 2	G	80	89	anti-parallel
Strand 3	G	68	77	anti-parallel
Strand 4	G	125	128	parallel
Strand 5	G	432	435	anti-parallel
Strand 6	G	446	449	anti-parallel
Strand 7	G	452	458	anti-parallel
Strand 8	G	472	475	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	100	first strand
Strand 2	G	110	111	parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	136	first strand
Strand 2	G	151	157	parallel
Strand 3	G	190	196	parallel
Strand 4	G	215	219	parallel
Strand 5	G	242	246	parallel
Strand 6	G	268	270	parallel
Strand 7	G	293	295	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	489	492	first strand
Strand 2	G	510	513	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	534	535	first strand
Strand 2	G	544	545	anti-parallel
Strand 3	G	548	549	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	36	first strand
Strand 2	H	14	24	anti-parallel
Strand 3	H	68	75	parallel
Strand 4	H	99	107	parallel
Strand 5	H	128	136	parallel
Strand 6	H	164	172	parallel
Strand 7	H	176	184	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	55	first strand
Strand 2	H	80	84	parallel
Strand 3	H	112	116	parallel
Strand 4	H	141	150	parallel
Strand 5	H	120	122	parallel
Strand 6	H	89	91	parallel
Strand 7	H	62	63	parallel

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There are 7 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	55	first strand
Strand 2	H	80	84	parallel
Strand 3	H	112	116	parallel
Strand 4	H	141	150	parallel
Strand 5	H	197	203	anti-parallel
Strand 6	H	233	240	anti-parallel
Strand 7	H	226	230	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	64	65	first strand
Strand 2	I	99	100	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	79	86	first strand
Strand 2	I	89	96	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	49	50	first strand
Strand 2	J	21	28	anti-parallel
Strand 3	J	76	83	anti-parallel
Strand 4	J	59	61	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	37	first strand
Strand 2	J	68	71	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	89	90	first strand
Strand 2	J	99	100	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	35	first strand
Strand 2	K	80	89	parallel
Strand 3	K	68	77	anti-parallel
Strand 4	K	117	120	parallel

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There are 8 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	92	97	first strand
Strand 2	K	80	89	anti-parallel
Strand 3	K	68	77	anti-parallel
Strand 4	K	125	128	parallel
Strand 5	K	432	435	anti-parallel
Strand 6	K	446	449	anti-parallel
Strand 7	K	452	458	anti-parallel
Strand 8	K	472	475	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	99	100	first strand
Strand 2	K	110	111	parallel

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There are 7 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	130	136	first strand
Strand 2	K	151	157	parallel
Strand 3	K	190	196	parallel
Strand 4	K	215	219	parallel
Strand 5	K	242	246	parallel
Strand 6	K	268	270	parallel
Strand 7	K	293	295	parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	130	136	first strand
Strand 2	K	151	157	parallel
Strand 3	K	190	196	parallel
Strand 4	K	489	492	parallel
Strand 5	K	510	513	parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	534	535	first strand
Strand 2	K	544	545	anti-parallel
Strand 3	K	548	549	anti-parallel

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There are 7 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	27	36	first strand
Strand 2	L	14	24	anti-parallel
Strand 3	L	68	75	parallel
Strand 4	L	99	107	parallel
Strand 5	L	128	136	parallel
Strand 6	L	164	172	parallel
Strand 7	L	176	184	anti-parallel

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There are 7 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	55	first strand
Strand 2	L	80	84	parallel
Strand 3	L	112	116	parallel
Strand 4	L	141	150	parallel
Strand 5	L	120	122	parallel
Strand 6	L	89	91	parallel
Strand 7	L	62	63	parallel

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There are 7 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	55	first strand
Strand 2	L	80	84	parallel
Strand 3	L	112	116	parallel
Strand 4	L	141	150	parallel
Strand 5	L	197	203	anti-parallel
Strand 6	L	233	240	anti-parallel
Strand 7	L	226	230	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HCN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HCN