Analysis of interatomic Contacts of Structural Units in PDB entry:
8HCU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HCU entry

There are 3 chains in PDB entry 8HCU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1102LEU 1335
B
 TYR 162VAL 254
C
 ASN 1619PRO 1746
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8HCU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1114 1125Right-handed alpha
Helix 2
AA2
A
1137 1146Right-handed alpha
Helix 3
AA3
A
1160 1165Right-handed alpha
Helix 4
AA4
A
1166 1168Right-handed 310
Helix 5
AA5
A
1187 1196Right-handed alpha
Helix 6
AA6
A
1226 1237Right-handed alpha
Helix 7
AA7
A
1252 1260Right-handed alpha
Helix 8
AA8
A
1265 1270Right-handed alpha
Helix 9
AA9
A
1284 1290Right-handed alpha
Helix 10
AB1
A
1307 1319Right-handed alpha
Helix 11
AB2
B
162 166Right-handed 310
Helix 12
AB3
B
199 212Right-handed alpha
Helix 13
AB4
B
232 241Right-handed alpha
Helix 14
AB5
C
1666 1674Right-handed alpha
Helix 15
AB6
C
1676 1684Right-handed alpha
Helix 16
AB7
C
1694 1703Right-handed alpha
Helix 17
AB8
C
1704 1708Right-handed 310
Helix 18
AB9
C
1712 1716Right-handed 310
Helix 19
AC1
C
1730 1737Right-handed alpha
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There are 3 sheets in PDB entry 8HCU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1104 1106first strand
Strand 2
A
1128 1130parallel
Strand 3
A
1153 1155parallel
Strand 4
A
1177 1179parallel
Strand 5
A
1217 1219parallel
Strand 6
A
1242 1244parallel
Strand 7
A
1272 1274parallel
Strand 8
A
1297 1299parallel
Strand 9
A
1331 1334anti-parallel
Strand 10
A
1324 1328anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
219 222anti-parallel
Strand 3
B
248 253anti-parallel
Strand 4
B
168 175parallel
Strand 5
B
191 195anti-parallel
Strand 6
C
1637 1642anti-parallel
Strand 7
C
1740 1744anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1650 1653first strand
Strand 2
C
1660 1665anti-parallel
Strand 3
C
1723 1728anti-parallel
Strand 4
C
1689 1693anti-parallel
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