Analysis of interatomic Contacts of Structural Units in PDB entry:
8HCZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HCZ entry

There is 1 chain in PDB entry 8HCZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4ASP 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8HCZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 17Right-handed alpha
Helix 2
AA2
A
41 57Right-handed alpha
Helix 3
AA3
A
72 85Right-handed alpha
Helix 4
AA4
A
97 112Right-handed alpha
Helix 5
AA5
A
119 121Right-handed 310
Helix 6
AA6
A
122 127Right-handed alpha
Helix 7
AA7
A
128 130Right-handed 310
Helix 8
AA8
A
145 147Right-handed 310
Helix 9
AA9
A
185 200Right-handed alpha
Helix 10
AB1
A
201 204Right-handed 310
Helix 11
AB2
A
221 229Right-handed alpha
Helix 12
AB3
A
229 236Right-handed alpha
Helix 13
AB4
A
243 250Right-handed alpha
Helix 14
AB5
A
251 259Right-handed alpha
Helix 15
AB6
A
269 280Right-handed alpha
Helix 16
AB7
A
281 286Right-handed 310
Helix 17
AB8
A
304 316Right-handed alpha
Helix 18
AB9
A
317 319Right-handed 310
Helix 19
AC1
A
321 323Right-handed 310
Helix 20
AC2
A
331 335Right-handed 310
Helix 21
AC3
A
353 359Right-handed alpha
Helix 22
AC4
A
417 426Right-handed alpha
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There are 5 sheets in PDB entry 8HCZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
21 27anti-parallel
Strand 3
A
239 241parallel
Strand 4
A
211 215parallel
Strand 5
A
263 268parallel
Strand 6
A
295 299parallel
Strand 7
A
325 329parallel
Strand 8
A
339 340anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
64 68parallel
Strand 3
A
115 118parallel
Strand 4
A
141 143parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
181 184anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 352first strand
Strand 2
A
371 374anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
454 460anti-parallel
Strand 3
A
442 451anti-parallel
Strand 4
A
401 406anti-parallel
Strand 5
A
383 388anti-parallel
Strand 6
A
393 394anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il